Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.214950	Acta1	actin, alpha 1, skeletal muscle	8	8 67.0 cM	11459
Gene Ontology	actin cytoskeleton | actin filament | cytoskeleton | cytoskeleton organization and biogenesis | motor activity | muscle contraction | muscle development | structural constituent of cytoskeleton | structural molecule activity
Human Homolog	ACTA1[actin, alpha 1, skeletal muscle]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 76 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGATCAAGA (18) 55.5 0.0555 P8 Cb GC GAGAAGATCT (13) 19.6 0.0196 P8 Cb GC AAGATCAAGG (3) 4.9 0.0049 P8 Cb GC TTTGAGACCT (4) 3.3 0.0033 P8 Cb GC AGTTTGTGAA 1.6 0.0016 P8 Cb GC GAGATCAAGA (5) 1.6 0.0016 P8 Cb GC TATGTGTGTA (5) 1.6 0.0016 Cb medulloblastoma AAGATCAAGA (18) 13.9 0.0139 Cb medulloblastoma AGTTTGTGAA 6.9 0.0069 Cb medulloblastoma GAGAAGATCT (13) 2.3 0.0023 Cb medulloblastoma GCCCAAAAAA (7) 2.3 0.0023 P8 GC+1d culture AAGATCAAGA (18) 24 0.024 P8 GC+1d culture AGTTTGTGAA 2.3 0.0023 P8 GC+1d culture GAGATCAAGA (5) 1.1 0.0011 P8 GC+SHH+1d culture AAGATCAAGA (18) 17.6 0.0176 P8 GC+SHH+1d culture AGTTTGTGAA 2.3 0.0023 P8 GC+SHH+1d culture GAGAAGATCT (13) 2.3 0.0023 P8 GC+SHH+1d culture TATGTGTGTA (5) 1.2 0.0012 P8 GC+SHH+1d culture TTTGAGAGCT (5) 1.2 0.0012 3T3 fibroblasts AAGATCAAGA (18) 56.1 0.0561 3T3 fibroblasts GAGAAGATCT (13) 7 0.007 E15 cortex AAGATCAAGA (18) 94 0.094 E15 cortex AAGATCAAGG (3) 4.9 0.0049 E15 cortex GAGAAGATCT (13) 4.9 0.0049 P1 cortex AAGATCAAGA (18) 63.6 0.0636 P1 cortex AAGATCAAGG (3) 4.5 0.0045 P1 cortex GAGATCAAGA (5) 4.5 0.0045 Hypothalamus AAGATCAAGA (18) 5.4 0.0054 Hypothalamus AGTTTGTGAA 1.8 0.0018 Hypothalamus GAGAAAGGAA (5) 1.8 0.0018 Hypothalamus GAGAAGATCT (13) 1.8 0.0018 Hypothalamus TATGTGGGTA (2) 1.8 0.0018 E12.5 retina AAGATCAAGA (18) 50.7 0.0507 E12.5 retina AAGATCAAGG (3) 1.9 0.0019 E12.5 retina AGTTTGTGAA 1.9 0.0019 E12.5 retina CCTGCCAAAA (3) 1.9 0.0019 E14.5 retina AAGATCAAGA (18) 7.3 0.0073 E14.5 retina AGTTTGTGAA 3.6 0.0036 E14.5 retina CCTGCCAAAA (3) 1.8 0.0018 E14.5 retina GAGAAAGGAA (5) 1.8 0.0018 E14.5 retina TATGTGGGTA (2) 1.8 0.0018 E14.5 retina TATGTGTGTA (5) 1.8 0.0018 E16.5 retina AAGATCAAGA (18) 7.2 0.0072 E16.5 retina AGTTTGTGAA 1.8 0.0018 E16.5 retina CCTGCCAAAA (3) 1.8 0.0018 E18.5 retina AAGATCAAGA (18) 7.3 0.0073 E18.5 retina AGTTTGTGAA 1.8 0.0018 E18.5 retina GCCCAAAAAA (7) 1.8 0.0018 E18.5 retina TTTGAGAGCT (5) 1.8 0.0018 P0.5 retina AAGATCAAGA (18) 27.5 0.0275 P0.5 retina AGTTTGTGAA 3.9 0.0039 P0.5 retina GCCCAAAAAA (7) 2 0.002 P2.5 retina AAGATCAAGA (18) 5.3 0.0053 P2.5 retina AAAATTAAAA (8) 1.8 0.0018 P4.5 retina AAGATCAAGA (18) 11.9 0.0119 P4.5 retina CCTGCCAAAA (3) 2 0.002 P4.5 retina TTTGAGAGCT (5) 2 0.002 P6.5 retina AGTTTGTGAA 8.3 0.0083 P6.5 retina AAGATCAAGA (18) 6.7 0.0067 P6.5 retina AAAATTAAAA (8) 3.3 0.0033 P6.5 retina GAGAAGATCT (13) 1.7 0.0017 P10.5 crx- retina AAAATTAAAA (8) 1.9 0.0019 P10.5 crx- retina AAGATCAAGA (18) 1.9 0.0019 P10.5 crx- retina AGTTTGTGAA 1.9 0.0019 P10.5 crx- retina TATGTGGGTA (2) 1.9 0.0019 P10.5 crx- retina TTTGAGAGCT (5) 1.9 0.0019 P10.5 crx+ retina AAGATCAAGA (18) 11.5 0.0115 P10.5 crx+ retina GAGAAGATCT (13) 1.9 0.0019 P10.5 crx+ retina TATGTGTGTA (5) 1.9 0.0019 Adult retinal AAGATCAAGA (18) 3.7 0.0037 Adult retinal AGTTTGTGAA 1.9 0.0019 Adult retinal GCCCAAAAAA (7) 1.9 0.0019 Adult retinal TTTGAGACCT (4) 1.9 0.0019 ONL AAGATCAAGA (18) 5.7 0.0057 ONL AGTTTGTGAA 5.7 0.0057 ONL GAGAAAGGAA (5) 1.9 0.0019