Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.21501
Chchd3
coiled-coil-helix-coiled-coil-helix domain containing 3
6
66075
Mm.21501
C79238
expressed sequence C79238
6
97292
Mm.21501
C030041B07Rik
RIKEN cDNA C030041B07 gene
6
77639
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 73 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
AAGGCAAAGA (
5
)
26.1
0.0261
P8 Cb GC
CAAGCTCCTT
(
3
)
3.3
0.0033
P8 Cb GC
TTCTAGATCA
(
3
)
3.3
0.0033
P8 Cb GC
CTGGAGAAGG (
14
)
1.6
0.0016
P8 Cb GC
CTTGGAAAAA (
9
)
1.6
0.0016
P8 Cb GC
TGTGCTGAGA
(
3
)
1.6
0.0016
Cb medulloblastoma
AAGGCAAAGA (
5
)
16.2
0.0162
Cb medulloblastoma
CAAGCTCCTT
(
3
)
2.3
0.0023
Cb medulloblastoma
GCTTTTTAAA (
7
)
2.3
0.0023
Cb medulloblastoma
TTCTAGATCA
(
3
)
2.3
0.0023
P8 GC+1d culture
AAGGCAAAGA (
5
)
11.4
0.0114
P8 GC+1d culture
TTCTAGATCA
(
3
)
3.4
0.0034
P8 GC+1d culture
CTTGGAAAAA (
9
)
2.3
0.0023
P8 GC+1d culture
CTCCATCCAG (
8
)
1.1
0.0011
P8 GC+1d culture
TGTGCTGAGA
(
3
)
1.1
0.0011
P8 GC+SHH+1d culture
AAGGCAAAGA (
5
)
24.6
0.0246
P8 GC+SHH+1d culture
TTCTAGATCA
(
3
)
2.3
0.0023
P8 GC+SHH+1d culture
CTTGGAAAAA (
9
)
1.2
0.0012
P8 GC+SHH+1d culture
GCTTTCTAAA (
6
)
1.2
0.0012
P8 GC+SHH+1d culture
GCTTTTTAAA (
7
)
1.2
0.0012
3T3 fibroblasts
AAGGCAAAGA (
5
)
31.5
0.0315
E15 cortex
AAGGCAAAGA (
5
)
24.7
0.0247
E15 cortex
AAGGCCAAGC (
6
)
4.9
0.0049
P1 cortex
AAGGCAAAGA (
5
)
36.4
0.0364
P1 cortex
CTCCATCCAG (
8
)
4.5
0.0045
Hypothalamus
AAGGCAAAGA (
5
)
27.2
0.0272
Hypothalamus
AAGGCCAAGC (
6
)
1.8
0.0018
Hypothalamus
GCTTTCTAAA (
6
)
1.8
0.0018
Hypothalamus
GCTTTTTAAA (
7
)
1.8
0.0018
Hypothalamus
TTCTAGATCA
(
3
)
1.8
0.0018
E12.5 retina
AAGGCAAAGA (
5
)
31.9
0.0319
E12.5 retina
TTCTAGATCA
(
3
)
3.8
0.0038
E14.5 retina
AAGGCAAAGA (
5
)
7.3
0.0073
E14.5 retina
TTCTAGATCA
(
3
)
3.6
0.0036
E16.5 retina
AAGGCAAAGA (
5
)
7.2
0.0072
E16.5 retina
TTCTAGATCA
(
3
)
3.6
0.0036
E16.5 retina
CTGGAGAAGG (
14
)
1.8
0.0018
E16.5 retina
CTGGGTAAAA (
8
)
1.8
0.0018
E18.5 retina
AAGGCAAAGA (
5
)
10.9
0.0109
E18.5 retina
CAAACAGACC (
4
)
1.8
0.0018
E18.5 retina
CTGGGTAAAA (
8
)
1.8
0.0018
E18.5 retina
CTTGGAAAAA (
9
)
1.8
0.0018
P0.5 retina
AAGGCAAAGA (
5
)
41.2
0.0412
P0.5 retina
CTCCATCCAG (
8
)
5.9
0.0059
P0.5 retina
TTCTAGATCA
(
3
)
5.9
0.0059
P0.5 retina
TGTGCTGAGA
(
3
)
2
0.002
P2.5 retina
AAGGCAAAGA (
5
)
14.1
0.0141
P2.5 retina
CAAGCTCCTT
(
3
)
3.5
0.0035
P2.5 retina
TTCTAGATCA
(
3
)
3.5
0.0035
P2.5 retina
CTCCATCCAG (
8
)
1.8
0.0018
P4.5 retina
AAGGCAAAGA (
5
)
11.9
0.0119
P4.5 retina
CAAGCTCCTT
(
3
)
4
0.004
P4.5 retina
TTCTAGATCA
(
3
)
2
0.002
P6.5 retina
AAGGCAAAGA (
5
)
5
0.005
P6.5 retina
CAAACAGACC (
4
)
3.3
0.0033
P6.5 retina
CTGGGTAAAA (
8
)
3.3
0.0033
P6.5 retina
CAAGCTCCTT
(
3
)
1.7
0.0017
P6.5 retina
CTGGAGAAGG (
14
)
1.7
0.0017
P6.5 retina
TTCTAGATCA
(
3
)
1.7
0.0017
P10.5 crx- retina
AAGGCAAAGA (
5
)
26
0.026
P10.5 crx- retina
CTCCATCCAG (
8
)
3.7
0.0037
P10.5 crx- retina
TTCTAGATCA
(
3
)
3.7
0.0037
P10.5 crx+ retina
AAGGCAAAGA (
5
)
3.8
0.0038
P10.5 crx+ retina
CAAGCTCCTT
(
3
)
3.8
0.0038
P10.5 crx+ retina
AAGGCCAAGC (
6
)
1.9
0.0019
P10.5 crx+ retina
CTCCATCCAG (
8
)
1.9
0.0019
Adult retinal
AAGGCAAAGA (
5
)
13
0.013
Adult retinal
GCTTTCTAAA (
6
)
1.9
0.0019
ONL
AAGGCAAAGA (
5
)
34.5
0.0345
ONL
TTCTAGATCA
(
3
)
3.8
0.0038
ONL
AAGGCCAAGC (
6
)
1.9
0.0019
ONL
CAAGCTCCTT
(
3
)
1.9
0.0019
ONL
GCTTTTTAAA (
7
)
1.9
0.0019
