Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.21630	Usp28	ubiquitin specific protease 28	9		235323
Gene Ontology	cysteine-type endopeptidase activity | peptidase activity | ubiquitin thiolesterase activity | ubiquitin-dependent protein catabolism
Human Homolog	USP28[ubiquitin specific protease 28]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 79 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC GGGAGGGAAG (3) 4.9 0.0049 P8 Cb GC CTGATGAAGA (6) 1.6 0.0016 P8 Cb GC TGTATGTGTG (9) 1.6 0.0016 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma GAGTCCATTC 6.9 0.0069 Cb medulloblastoma GGGAGGGAAG (3) 4.6 0.0046 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture CTGATGAAGA (6) 2.3 0.0023 P8 GC+1d culture GGAGGGAAGA (5) 2.3 0.0023 P8 GC+1d culture GGGAGGGAAG (3) 2.3 0.0023 P8 GC+1d culture TGTATGTGTG (9) 1.1 0.0011 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture GGAGGGAAGA (5) 4.7 0.0047 P8 GC+SHH+1d culture GGGAGGGAAG (3) 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts GGAGGGAAGA (5) 3.5 0.0035 3T3 fibroblasts TTGAGGGCAG 3.5 0.0035 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex GGGAGGGAAG (3) 4.9 0.0049 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex GGAGGGAAGA (5) 9.1 0.0091 P1 cortex TGTATGTGTG (9) 4.5 0.0045 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus GGGAGGGAAG (3) 10.9 0.0109 Hypothalamus GAGTCCATTC 1.8 0.0018 Hypothalamus GGAGGGAAGA (5) 1.8 0.0018 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina GGAGGGAAGA (5) 7.5 0.0075 E12.5 retina GGGAGGGAAG (3) 3.8 0.0038 E12.5 retina CTGATGAAGA (6) 1.9 0.0019 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina GGAGGGAAGA (5) 7.3 0.0073 E14.5 retina TTGAGGGCAG 3.6 0.0036 E14.5 retina CTGATGAAGA (6) 1.8 0.0018 E14.5 retina GGGAGGGAAG (3) 1.8 0.0018 E14.5 retina TGTATGTGTG (9) 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina GGAGGGAAGA (5) 3.6 0.0036 E16.5 retina GGGAGGGAAG (3) 1.8 0.0018 E16.5 retina TGTATGTGTG (9) 1.8 0.0018 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina GGAGGGAAGA (5) 7.3 0.0073 E18.5 retina TGTATGTGTG (9) 1.8 0.0018 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina GGAGGGAAGA (5) 3.9 0.0039 P0.5 retina CTGATGAAGA (6) 2 0.002 P0.5 retina GGGAGGGAAG (3) 2 0.002 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina GGGAGGGAAG (3) 10.6 0.0106 P2.5 retina GGAGGGAAGA (5) 8.8 0.0088 P2.5 retina CTGGTATTTT (4) 3.5 0.0035 P2.5 retina CTGATGAAGA (6) 1.8 0.0018 P2.5 retina TTGAGGGCAG 1.8 0.0018 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina GGAGGGAAGA (5) 9.9 0.0099 P4.5 retina GGGAGGGAAG (3) 4 0.004 P4.5 retina CTGATGAAGA (6) 2 0.002 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina GGAGGGAAGA (5) 10 0.01 P6.5 retina GGGAGGGAAG (3) 3.3 0.0033 P6.5 retina CTGATGAAGA (6) 1.7 0.0017 P6.5 retina CTGGTATTTT (4) 1.7 0.0017 P6.5 retina TTGAGGGCAG 1.7 0.0017 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina GGAGGGAAGA (5) 7.4 0.0074 P10.5 crx- retina GGGAGGGAAG (3) 3.7 0.0037 P10.5 crx- retina CTGATGAAGA (6) 1.9 0.0019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina GGGAGGGAAG (3) 5.8 0.0058 P10.5 crx+ retina GGAGGGAAGA (5) 3.8 0.0038 P10.5 crx+ retina GAGTCCATTC 1.9 0.0019 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal GGAGGGAAGA (5) 1.9 0.0019 Adult retinal TGTATGTGTG (9) 1.9 0.0019 ONL CCTTTAATCC (355) 84.3 0.0843 ONL GGGAGGGAAG (3) 7.7 0.0077 ONL CTGATGAAGA (6) 1.9 0.0019 ONL TGTATGTGTG (9) 1.9 0.0019