Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.216511	Scfd1	sec1 family domain containing 1	12		76983
Gene Ontology	endoplasmic reticulum | Golgi apparatus | protein transport | protein transporter activity | transport | vesicle-mediated transport
Human Homolog	SCFD1[sec1 family domain containing 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 75 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAAAAAAAAA (196) 47.3 0.0473 P8 Cb GC GAAGATGAAG (10) 4.9 0.0049 P8 Cb GC TTGAATTAAA (4) 4.9 0.0049 P8 Cb GC CCCTAACTGC 3.3 0.0033 P8 Cb GC GAAAAAGAAA (15) 3.3 0.0033 P8 Cb GC GAGATGAAGT (2) 3.3 0.0033 Cb medulloblastoma TAAAAAAAAA (196) 106.4 0.1064 Cb medulloblastoma TTGAATTAAA (4) 6.9 0.0069 Cb medulloblastoma CCCTAACTGC 4.6 0.0046 Cb medulloblastoma GAGATGAAGT (2) 2.3 0.0023 Cb medulloblastoma TCAATGTCTC (2) 2.3 0.0023 P8 GC+1d culture TAAAAAAAAA (196) 66.2 0.0662 P8 GC+1d culture CCCTAACTGC 6.8 0.0068 P8 GC+1d culture TTGAATTAAA (4) 6.8 0.0068 P8 GC+1d culture TTCCTGCAGT (3) 3.4 0.0034 P8 GC+1d culture TCAATGTCTC (2) 1.1 0.0011 P8 GC+SHH+1d culture TAAAAAAAAA (196) 93.7 0.0937 P8 GC+SHH+1d culture TTGAATTAAA (4) 7 0.007 P8 GC+SHH+1d culture TTCCTGCAGT (3) 2.3 0.0023 P8 GC+SHH+1d culture CCCTAACTGC 1.2 0.0012 P8 GC+SHH+1d culture GAAAAAGAAA (15) 1.2 0.0012 3T3 fibroblasts TAAAAAAAAA (196) 7 0.007 E15 cortex TAAAAAAAAA (196) 9.9 0.0099 E15 cortex CCCTAACTGC 4.9 0.0049 P1 cortex TAAAAAAAAA (196) 50 0.05 P1 cortex CCCTAACTGC 9.1 0.0091 Hypothalamus TAAAAAAAAA (196) 32.6 0.0326 Hypothalamus TTGAATTAAA (4) 10.9 0.0109 Hypothalamus CCCTAACTGC 1.8 0.0018 E12.5 retina TAAAAAAAAA (196) 24.4 0.0244 E12.5 retina TTGAATTAAA (4) 3.8 0.0038 E12.5 retina CCCTAACTGC 1.9 0.0019 E12.5 retina TTCCTGCAGT (3) 1.9 0.0019 E14.5 retina TAAAAAAAAA (196) 41.9 0.0419 E14.5 retina TTGAATTAAA (4) 5.5 0.0055 E14.5 retina CCCTAACTGC 1.8 0.0018 E16.5 retina TAAAAAAAAA (196) 23.5 0.0235 E16.5 retina CCCTAACTGC 9.1 0.0091 E16.5 retina TTGAATTAAA (4) 5.4 0.0054 E16.5 retina TTCCTGCAGT (3) 1.8 0.0018 E18.5 retina TAAAAAAAAA (196) 107.3 0.1073 E18.5 retina TTGAATTAAA (4) 16.4 0.0164 E18.5 retina CCCTAACTGC 3.6 0.0036 E18.5 retina GAAAAAGAAA (15) 1.8 0.0018 P0.5 retina TAAAAAAAAA (196) 37.3 0.0373 P0.5 retina TTGAATTAAA (4) 5.9 0.0059 P2.5 retina TAAAAAAAAA (196) 72.2 0.0722 P2.5 retina TTGAATTAAA (4) 12.3 0.0123 P2.5 retina CCCTAACTGC 3.5 0.0035 P2.5 retina GAAAAAGAAA (15) 3.5 0.0035 P2.5 retina TCAATGTCTC (2) 3.5 0.0035 P4.5 retina TAAAAAAAAA (196) 122.8 0.1228 P4.5 retina TTGAATTAAA (4) 13.9 0.0139 P4.5 retina CCCTAACTGC 4 0.004 P4.5 retina TCAATGTCTC (2) 4 0.004 P4.5 retina GAGAATGAAA (7) 2 0.002 P6.5 retina TAAAAAAAAA (196) 63.4 0.0634 P6.5 retina TTGAATTAAA (4) 6.7 0.0067 P6.5 retina CCCTAACTGC 3.3 0.0033 P6.5 retina TTCCTGCAGT (3) 1.7 0.0017 P10.5 crx- retina TAAAAAAAAA (196) 9.3 0.0093 P10.5 crx- retina CCCTAACTGC 5.6 0.0056 P10.5 crx- retina GAGAATGAAA (7) 1.9 0.0019 P10.5 crx- retina TCAATGTCTC (2) 1.9 0.0019 P10.5 crx- retina TTGAATTAAA (4) 1.9 0.0019 P10.5 crx+ retina TAAAAAAAAA (196) 25 0.025 P10.5 crx+ retina CCCTAACTGC 3.8 0.0038 P10.5 crx+ retina TTGAATTAAA (4) 1.9 0.0019 Adult retinal TAAAAAAAAA (196) 18.5 0.0185 Adult retinal TTGAATTAAA (4) 3.7 0.0037 Adult retinal GAGAAGGAAA (8) 1.9 0.0019 Adult retinal GAGATGAAGT (2) 1.9 0.0019 ONL TAAAAAAAAA (196) 28.7 0.0287 ONL GAGAAGGAAA (8) 5.7 0.0057 ONL TTGAATTAAA (4) 5.7 0.0057