Mouse Retina SAGE Library
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Gene: 
Accession: 
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag: 
Cytoband (Mm): 
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene: 
Cytoband (Hs): 
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.21652
3930401K13Rik
RIKEN cDNA 3930401K13 gene
16
16 A1 (16 3.4 cM)
74022
Human Homolog
N-PAC[cytokine-like nuclear factor n-pac]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
Total 6 In Situ Hybridization Images
Images -- Click to Enlarge
SAGE Tags
Total 160 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TTGCTTTTGG (
2
)
21.2
0.0212
P8 Cb GC
ATTTTGTGCA
17.9
0.0179
P8 Cb GC
GTGGCGCACG (
61
)
13.1
0.0131
P8 Cb GC
TGAGCCTGGT (
3
)
9.8
0.0098
P8 Cb GC
GCAGCTGCAG
(
4
)
1.6
0.0016
P8 Cb GC
TCCTGAGATC (
4
)
1.6
0.0016
P8 Cb GC
TTTTGTCTTT (
5
)
1.6
0.0016
P8 Cb GC
TTTTGTTTTT (
9
)
1.6
0.0016
Cb medulloblastoma
ATTTTGTGCA
23.1
0.0231
Cb medulloblastoma
TGAGCCTGGT (
3
)
11.6
0.0116
Cb medulloblastoma
CTCACAAGAA (
5
)
6.9
0.0069
Cb medulloblastoma
GTGGCGCACG (
61
)
6.9
0.0069
Cb medulloblastoma
TTGCTTTTGG (
2
)
6.9
0.0069
Cb medulloblastoma
ATAAAGATTA (
2
)
2.3
0.0023
Cb medulloblastoma
ATATGCCTGC
(
4
)
2.3
0.0023
Cb medulloblastoma
GGACAAGGAA
(
2
)
2.3
0.0023
Cb medulloblastoma
GGCACGGGGC
(
6
)
2.3
0.0023
Cb medulloblastoma
TCCTGAGATC (
4
)
2.3
0.0023
Cb medulloblastoma
TTTTGTTTTT (
9
)
2.3
0.0023
P8 GC+1d culture
TTTTGTTTTC (
5
)
28.5
0.0285
P8 GC+1d culture
TTGCTTTTGG (
2
)
18.3
0.0183
P8 GC+1d culture
ATTTTGTGCA
16
0.016
P8 GC+1d culture
TGAGCCTGGT (
3
)
10.3
0.0103
P8 GC+1d culture
GTGGCGCACG (
61
)
6.8
0.0068
P8 GC+1d culture
GCCTGGGAAT (
3
)
1.1
0.0011
P8 GC+1d culture
GGCACGGGGC
(
6
)
1.1
0.0011
P8 GC+1d culture
TCTAGATGAG (
6
)
1.1
0.0011
P8 GC+SHH+1d culture
ATTTTGTGCA
23.4
0.0234
P8 GC+SHH+1d culture
TTTTGTTTTC (
5
)
22.2
0.0222
P8 GC+SHH+1d culture
TGAGCCTGGT (
3
)
18.7
0.0187
P8 GC+SHH+1d culture
TTGCTTTTGG (
2
)
18.7
0.0187
P8 GC+SHH+1d culture
TTTTGTTTTT (
9
)
4.7
0.0047
P8 GC+SHH+1d culture
GGCACGGGGC
(
6
)
3.5
0.0035
P8 GC+SHH+1d culture
TTTTGTCTTT (
5
)
3.5
0.0035
P8 GC+SHH+1d culture
CTCACAAGAA (
5
)
2.3
0.0023
P8 GC+SHH+1d culture
GTGGCGCACG (
61
)
2.3
0.0023
P8 GC+SHH+1d culture
GCAGCTGCAG
(
4
)
1.2
0.0012
P8 GC+SHH+1d culture
GCCTGGGAAT (
3
)
1.2
0.0012
P8 GC+SHH+1d culture
TCCTGAGATC (
4
)
1.2
0.0012
3T3 fibroblasts
GTGGCGCACG (
61
)
63.1
0.0631
3T3 fibroblasts
TGAGCCTGGT (
3
)
21
0.021
3T3 fibroblasts
ATTTTGTGCA
3.5
0.0035
E15 cortex
GTGGCGCACG (
61
)
113.8
0.1138
E15 cortex
TTGCTTTTGG (
2
)
24.7
0.0247
E15 cortex
TGAGCCTGGT (
3
)
14.8
0.0148
E15 cortex
ATTTTGTGCA
4.9
0.0049
E15 cortex
TCCTGAGATC (
4
)
4.9
0.0049
P1 cortex
GTGGCGCACG (
61
)
18.2
0.0182
P1 cortex
TTGCTTTTGG (
2
)
13.6
0.0136
P1 cortex
TTTTGTTTTT (
9
)
9.1
0.0091
P1 cortex
ATTTTGTGCA
4.5
0.0045
P1 cortex
TGAGCCTGGT (
3
)
4.5
0.0045
Hypothalamus
TGAGCCTGGT (
3
)
12.7
0.0127
Hypothalamus
CTCACAAGAA (
5
)
9.1
0.0091
Hypothalamus
ATTTTGTGCA
3.6
0.0036
Hypothalamus
GTGGCGCACG (
61
)
3.6
0.0036
Hypothalamus
TTGCTTTTGG (
2
)
3.6
0.0036
Hypothalamus
GAGGGAGGGG (
5
)
1.8
0.0018
Hypothalamus
GCCTGGGAAT (
3
)
1.8
0.0018
Hypothalamus
TCCTGAGATC (
4
)
1.8
0.0018
Hypothalamus
TCTAGATGAG (
6
)
1.8
0.0018
Hypothalamus
TTTTGTTTTT (
9
)
1.8
0.0018
E12.5 retina
ATTTTGTGCA
18.8
0.0188
E12.5 retina
TTGCTTTTGG (
2
)
16.9
0.0169
E12.5 retina
GTGGCGCACG (
61
)
11.3
0.0113
E12.5 retina
TGAGCCTGGT (
3
)
7.5
0.0075
E12.5 retina
ATATGCCTGC
(
4
)
1.9
0.0019
E12.5 retina
GGACAAGGAA
(
2
)
1.9
0.0019
E12.5 retina
GGCAAGGCCC (
8
)
1.9
0.0019
E12.5 retina
TCCTGAGATC (
4
)
1.9
0.0019
E12.5 retina
TCTAGATGAG (
6
)
1.9
0.0019
E14.5 retina
GTGGCGCACG (
61
)
29.2
0.0292
E14.5 retina
TGAGCCTGGT (
3
)
14.6
0.0146
E14.5 retina
TTGCTTTTGG (
2
)
12.8
0.0128
E14.5 retina
ATTTTGTGCA
5.5
0.0055
E14.5 retina
GCCTGGGAAT (
3
)
3.6
0.0036
E14.5 retina
TTTTGTTTTT (
9
)
3.6
0.0036
E14.5 retina
GCAGCTGCAG
(
4
)
1.8
0.0018
E16.5 retina
TTGCTTTTGG (
2
)
29
0.029
E16.5 retina
TGAGCCTGGT (
3
)
27.2
0.0272
E16.5 retina
GTGGCGCACG (
61
)
25.4
0.0254
E16.5 retina
ATTTTGTGCA
19.9
0.0199
E16.5 retina
TTTTGTCTTT (
5
)
3.6
0.0036
E16.5 retina
GCCTGGGAAT (
3
)
1.8
0.0018
E16.5 retina
TCCTGAGATC (
4
)
1.8
0.0018
E16.5 retina
TCTAGATGAG (
6
)
1.8
0.0018
E16.5 retina
TTTTGTTTTT (
9
)
1.8
0.0018
E18.5 retina
TGAGCCTGGT (
3
)
16.4
0.0164
E18.5 retina
ATTTTGTGCA
10.9
0.0109
E18.5 retina
GTGGCGCACG (
61
)
10.9
0.0109
E18.5 retina
TTGCTTTTGG (
2
)
9.1
0.0091
E18.5 retina
GGCAAGGCCC (
8
)
3.6
0.0036
E18.5 retina
GCAGCTGCAG
(
4
)
1.8
0.0018
E18.5 retina
GGCACGGGGC
(
6
)
1.8
0.0018
E18.5 retina
TTTTGTCTTT (
5
)
1.8
0.0018
P0.5 retina
GTGGCGCACG (
61
)
25.5
0.0255
P0.5 retina
ATTTTGTGCA
13.7
0.0137
P0.5 retina
TGAGCCTGGT (
3
)
11.8
0.0118
P0.5 retina
TTGCTTTTGG (
2
)
5.9
0.0059
P0.5 retina
ATATGCCTGC
(
4
)
2
0.002
P0.5 retina
TCCTGAGATC (
4
)
2
0.002
P2.5 retina
TGAGCCTGGT (
3
)
26.4
0.0264
P2.5 retina
TTGCTTTTGG (
2
)
21.1
0.0211
P2.5 retina
GTGGCGCACG (
61
)
17.6
0.0176
P2.5 retina
ATTTTGTGCA
7
0.007
P2.5 retina
ATAAAGATTA (
2
)
3.5
0.0035
P2.5 retina
GGACAAGGAA
(
2
)
1.8
0.0018
P2.5 retina
TCCTGAGATC (
4
)
1.8
0.0018
P4.5 retina
GTGGCGCACG (
61
)
17.8
0.0178
P4.5 retina
TGAGCCTGGT (
3
)
11.9
0.0119
P4.5 retina
TTGCTTTTGG (
2
)
11.9
0.0119
P4.5 retina
ATTTTGTGCA
9.9
0.0099
P4.5 retina
GGCAAGGCCC (
8
)
5.9
0.0059
P4.5 retina
TCCTGAGATC (
4
)
4
0.004
P4.5 retina
TCTAGATGAG (
6
)
2
0.002
P4.5 retina
TTTTGTTTTT (
9
)
2
0.002
P6.5 retina
GTGGCGCACG (
61
)
38.3
0.0383
P6.5 retina
ATTTTGTGCA
18.3
0.0183
P6.5 retina
TGAGCCTGGT (
3
)
15
0.015
P6.5 retina
TTGCTTTTGG (
2
)
10
0.01
P6.5 retina
ATAAAGATTA (
2
)
6.7
0.0067
P6.5 retina
GAGGGAGGGG (
5
)
1.7
0.0017
P6.5 retina
GGCAAGGCCC (
8
)
1.7
0.0017
P6.5 retina
GGCACGGGGC
(
6
)
1.7
0.0017
P6.5 retina
TCCTGAGATC (
4
)
1.7
0.0017
P6.5 retina
TCTAGATGAG (
6
)
1.7
0.0017
P10.5 crx- retina
ATTTTGTGCA
35.3
0.0353
P10.5 crx- retina
TGAGCCTGGT (
3
)
22.3
0.0223
P10.5 crx- retina
TTGCTTTTGG (
2
)
20.4
0.0204
P10.5 crx- retina
GTGGCGCACG (
61
)
13
0.013
P10.5 crx- retina
TCCTGAGATC (
4
)
7.4
0.0074
P10.5 crx- retina
CTCACAAGAA (
5
)
1.9
0.0019
P10.5 crx- retina
GGCACGGGGC
(
6
)
1.9
0.0019
P10.5 crx- retina
TTTTGTCTTT (
5
)
1.9
0.0019
P10.5 crx+ retina
GTGGCGCACG (
61
)
32.7
0.0327
P10.5 crx+ retina
ATTTTGTGCA
26.9
0.0269
P10.5 crx+ retina
TGAGCCTGGT (
3
)
13.5
0.0135
P10.5 crx+ retina
TTGCTTTTGG (
2
)
7.7
0.0077
P10.5 crx+ retina
GGCAAGGCCC (
8
)
3.8
0.0038
P10.5 crx+ retina
GGCACGGGGC
(
6
)
1.9
0.0019
P10.5 crx+ retina
TCCTGAGATC (
4
)
1.9
0.0019
P10.5 crx+ retina
TCTAGATGAG (
6
)
1.9
0.0019
P10.5 crx+ retina
TTTTGTCTTT (
5
)
1.9
0.0019
P10.5 crx+ retina
TTTTGTTTTT (
9
)
1.9
0.0019
Adult retinal
GTGGCGCACG (
61
)
22.2
0.0222
Adult retinal
TGAGCCTGGT (
3
)
14.8
0.0148
Adult retinal
ATTTTGTGCA
9.3
0.0093
Adult retinal
TTGCTTTTGG (
2
)
3.7
0.0037
Adult retinal
TTTTGTCTTT (
5
)
3.7
0.0037
Adult retinal
GGCAAGGCCC (
8
)
1.9
0.0019
Adult retinal
GGCACGGGGC
(
6
)
1.9
0.0019
Adult retinal
TCCTGAGATC (
4
)
1.9
0.0019
ONL
GTGGCGCACG (
61
)
23
0.023
ONL
ATTTTGTGCA
15.3
0.0153
ONL
GAGGGAGGGG (
5
)
3.8
0.0038
ONL
ATAAAGATTA (
2
)
1.9
0.0019
ONL
GGCAAGGCCC (
8
)
1.9
0.0019
ONL
TCTAGATGAG (
6
)
1.9
0.0019
ONL
TTGCTTTTGG (
2
)
1.9
0.0019
ONL
TTTTGTCTTT (
5
)
1.9
0.0019