Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.21772	Smarcd2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	11		83796
Human Homolog	SMARCD2[SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 90 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TCCATCAAGA (3) 9.8 0.0098 P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC CTGGATCAAT 1.6 0.0016 P8 Cb GC GGATCTTTTA (5) 1.6 0.0016 P8 Cb GC GTGGGGAGCC (8) 1.6 0.0016 P8 Cb GC TTTACAGGCT (2) 1.6 0.0016 Cb medulloblastoma TCCATCAAGA (3) 9.2 0.0092 Cb medulloblastoma GTGGGGAGCC (8) 6.9 0.0069 Cb medulloblastoma GAGTCTGGCT (2) 2.3 0.0023 Cb medulloblastoma TTTACAGGCT (2) 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture TCCATCAAGA (3) 22.8 0.0228 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture GTGGGGAGCC (8) 8 0.008 P8 GC+1d culture TTTACAGGCT (2) 4.6 0.0046 P8 GC+1d culture GACTCTGGCT (3) 1.1 0.0011 P8 GC+1d culture GAGTCTGGCT (2) 1.1 0.0011 P8 GC+SHH+1d culture TCCATCAAGA (3) 17.6 0.0176 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture GTGGGGAGCC (8) 3.5 0.0035 P8 GC+SHH+1d culture GACTCTGGCT (3) 2.3 0.0023 P8 GC+SHH+1d culture TTTACAGGCT (2) 2.3 0.0023 3T3 fibroblasts TCCATCAAGA (3) 10.5 0.0105 E15 cortex GTGGGGAGCC (8) 29.7 0.0297 E15 cortex TCCATCAAGA (3) 4.9 0.0049 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex GACTCTGGCT (3) 4.5 0.0045 P1 cortex TCCATCAAGA (3) 4.5 0.0045 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus TCCATCAAGA (3) 21.7 0.0217 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus GACTCTGGCT (3) 1.8 0.0018 E12.5 retina TCCATCAAGA (3) 35.7 0.0357 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina GGATCTTTTA (5) 1.9 0.0019 E12.5 retina GTGGGGAGCC (8) 1.9 0.0019 E12.5 retina TTTACAGGCT (2) 1.9 0.0019 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina TCCATCAAGA (3) 21.9 0.0219 E14.5 retina GACTCTGGCT (3) 3.6 0.0036 E14.5 retina CTGGATCAAT 1.8 0.0018 E16.5 retina TCCATCAAGA (3) 18.1 0.0181 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina ATTACGCCAA (233) 1.8 0.0018 E16.5 retina CTGGATCAAT 1.8 0.0018 E16.5 retina GACTCTGGCT (3) 1.8 0.0018 E16.5 retina GTGGGGAGCC (8) 1.8 0.0018 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina GTGGGGAGCC (8) 5.5 0.0055 E18.5 retina TCCATCAAGA (3) 5.5 0.0055 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina TCCATCAAGA (3) 5.9 0.0059 P0.5 retina GAGTCTGGCT (2) 3.9 0.0039 P0.5 retina TTTACAGGCT (2) 3.9 0.0039 P0.5 retina ATTACGCCAA (233) 2 0.002 P0.5 retina CTGGATCAAT 2 0.002 P0.5 retina GACTCTGGCT (3) 2 0.002 P0.5 retina GTGGGGAGCC (8) 2 0.002 P2.5 retina TCCATCAAGA (3) 21.1 0.0211 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina GACTCTGGCT (3) 3.5 0.0035 P2.5 retina CTGGATCAAT 1.8 0.0018 P2.5 retina GTGGGGAGCC (8) 1.8 0.0018 P4.5 retina TCCATCAAGA (3) 21.8 0.0218 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina GACTCTGGCT (3) 5.9 0.0059 P4.5 retina GTGGGGAGCC (8) 4 0.004 P6.5 retina TCCATCAAGA (3) 26.7 0.0267 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina GTGGGGAGCC (8) 3.3 0.0033 P6.5 retina CTGGATCAAT 1.7 0.0017 P6.5 retina GAGTCTGGCT (2) 1.7 0.0017 P6.5 retina TTTACAGGCT (2) 1.7 0.0017 P10.5 crx- retina TCCATCAAGA (3) 11.1 0.0111 P10.5 crx- retina GACTCTGGCT (3) 3.7 0.0037 P10.5 crx+ retina TCCATCAAGA (3) 15.4 0.0154 P10.5 crx+ retina GACTCTGGCT (3) 11.5 0.0115 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 P10.5 crx+ retina CTGGATCAAT 1.9 0.0019 P10.5 crx+ retina GGATCTTTTA (5) 1.9 0.0019 Adult retinal TCCATCAAGA (3) 16.7 0.0167 Adult retinal GACTCTGGCT (3) 9.3 0.0093 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal ATTACGCCAA (233) 3.7 0.0037 Adult retinal TTTACAGGCT (2) 3.7 0.0037 Adult retinal CTGGATCAAT 1.9 0.0019 ONL TCCATCAAGA (3) 9.6 0.0096 ONL GACTCTGGCT (3) 5.7 0.0057 ONL TTTTTTTTTT (433) 3.8 0.0038 ONL TTTACAGGCT (2) 1.9 0.0019