Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.21904	Rab6ip1	Rab6 interacting protein 1	7		19347
Gene Ontology	nucleic acid binding | protein binding | Rab interactor activity
Human Homolog	RAB6IP1[RAB6 interacting protein 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 80 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTTAACAGGT 4.9 0.0049 P8 Cb GC ATGATGATGA (16) 3.3 0.0033 P8 Cb GC GAGAAAAAAA (18) 3.3 0.0033 P8 Cb GC AGCTCACCAA (4) 1.6 0.0016 P8 Cb GC TAAGACAATA (2) 1.6 0.0016 P8 Cb GC TTATTACTGT (5) 1.6 0.0016 Cb medulloblastoma GAGAAAAAAA (18) 11.6 0.0116 Cb medulloblastoma AGCTCACCAA (4) 2.3 0.0023 Cb medulloblastoma ATGATGATGA (16) 2.3 0.0023 Cb medulloblastoma TTATTACTGT (5) 2.3 0.0023 Cb medulloblastoma TTTAACAGGT 2.3 0.0023 P8 GC+1d culture AGCTCACCAA (4) 4.6 0.0046 P8 GC+1d culture GAGAAAAAAA (18) 4.6 0.0046 P8 GC+1d culture TTTAACAGGT 2.3 0.0023 P8 GC+1d culture ATGATGATGA (16) 1.1 0.0011 P8 GC+1d culture GTTTCCCTGT (3) 1.1 0.0011 P8 GC+SHH+1d culture AGCTCACCAA (4) 14.1 0.0141 P8 GC+SHH+1d culture ATGATGATGA (16) 3.5 0.0035 P8 GC+SHH+1d culture GAGAAAAAAA (18) 3.5 0.0035 P8 GC+SHH+1d culture TTTAACAGGT 3.5 0.0035 P8 GC+SHH+1d culture TCTCCTTCCC (6) 1.2 0.0012 P8 GC+SHH+1d culture TTATTACTGT (5) 1.2 0.0012 3T3 fibroblasts AGCTCACCAA (4) 7 0.007 E15 cortex AGCTCACCAA (4) 19.8 0.0198 E15 cortex TCTCCTTCCC (6) 4.9 0.0049 E15 cortex TGTGTTTCAA (2) 4.9 0.0049 P1 cortex AGCTCACCAA (4) 4.5 0.0045 P1 cortex GAGAAAAAAA (18) 4.5 0.0045 P1 cortex TTATTACTGT (5) 4.5 0.0045 Hypothalamus TTTAACAGGT 7.2 0.0072 Hypothalamus AGCTCACCAA (4) 5.4 0.0054 Hypothalamus GAGAAAAAAA (18) 1.8 0.0018 Hypothalamus GTTTCCCTGT (3) 1.8 0.0018 E12.5 retina AGCTCACCAA (4) 15 0.015 E12.5 retina ATGATGATGA (16) 9.4 0.0094 E12.5 retina TTATTACTGT (5) 1.9 0.0019 E12.5 retina TTTAACAGGT 1.9 0.0019 E14.5 retina GAGAAAAAAA (18) 9.1 0.0091 E14.5 retina AGCTCACCAA (4) 7.3 0.0073 E14.5 retina ATGATGATGA (16) 3.6 0.0036 E14.5 retina TGTGTTTCAA (2) 3.6 0.0036 E14.5 retina TTTAACAGGT 3.6 0.0036 E16.5 retina AGCTCACCAA (4) 12.7 0.0127 E16.5 retina ATGATGATGA (16) 3.6 0.0036 E16.5 retina TTTAACAGGT 3.6 0.0036 E16.5 retina GAGAAAAAAA (18) 1.8 0.0018 E18.5 retina AGCTCACCAA (4) 10.9 0.0109 E18.5 retina ATGATGATGA (16) 7.3 0.0073 E18.5 retina GAGAAAAAAA (18) 1.8 0.0018 E18.5 retina TAAGACAATA (2) 1.8 0.0018 E18.5 retina TTTAACAGGT 1.8 0.0018 P0.5 retina AGCTCACCAA (4) 15.7 0.0157 P0.5 retina ATGATGATGA (16) 9.8 0.0098 P0.5 retina GAGAAAAAAA (18) 2 0.002 P0.5 retina TTATTACTGT (5) 2 0.002 P2.5 retina AGCTCACCAA (4) 17.6 0.0176 P2.5 retina ATGATGATGA (16) 17.6 0.0176 P2.5 retina GAGAAAAAAA (18) 3.5 0.0035 P2.5 retina TTTAACAGGT 1.8 0.0018 P4.5 retina AGCTCACCAA (4) 11.9 0.0119 P4.5 retina GAGAAAAAAA (18) 5.9 0.0059 P4.5 retina TTTAACAGGT 4 0.004 P6.5 retina AGCTCACCAA (4) 11.7 0.0117 P6.5 retina TTTAACAGGT 6.7 0.0067 P6.5 retina ATGATGATGA (16) 5 0.005 P6.5 retina GAGAAAAAAA (18) 3.3 0.0033 P6.5 retina GTTTCCCTGT (3) 1.7 0.0017 P6.5 retina TAAGACAATA (2) 1.7 0.0017 P10.5 crx- retina TTTAACAGGT 11.1 0.0111 P10.5 crx- retina GAGAAAAAAA (18) 1.9 0.0019 P10.5 crx- retina TCTCCTTCCC (6) 1.9 0.0019 P10.5 crx+ retina AGCTCACCAA (4) 11.5 0.0115 P10.5 crx+ retina GAGAAAAAAA (18) 7.7 0.0077 P10.5 crx+ retina TTTAACAGGT 5.8 0.0058 Adult retinal GTTTCCCTGT (3) 1.9 0.0019 Adult retinal TTTAACAGGT 1.9 0.0019 ONL ATGATGATGA (16) 3.8 0.0038 ONL AGCTCACCAA (4) 1.9 0.0019 ONL GAGAAAAAAA (18) 1.9 0.0019 ONL TTTAACAGGT 1.9 0.0019