Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.21912
Fbxo21
F-box only protein 21
5
231670
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 110 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GAAAAAAAAA (
204
)
45.7
0.0457
P8 Cb GC
GAGGTGGGAG
(
7
)
3.3
0.0033
P8 Cb GC
GATGTAACTT
1.6
0.0016
P8 Cb GC
GCCACAGGAG (
2
)
1.6
0.0016
Cb medulloblastoma
GAAAAAAAAA (
204
)
173.4
0.1734
Cb medulloblastoma
AAAGGCCACT
(
2
)
2.3
0.0023
Cb medulloblastoma
ATGTAAAAAA (
6
)
2.3
0.0023
Cb medulloblastoma
GAAGGAAGGA
2.3
0.0023
Cb medulloblastoma
GTGCTATGCA (
3
)
2.3
0.0023
Cb medulloblastoma
GTGGGAGTCT
2.3
0.0023
P8 GC+1d culture
GAAAAAAAAA (
204
)
41.1
0.0411
P8 GC+1d culture
GTGGGAGTCT
6.8
0.0068
P8 GC+1d culture
CCCTTCTAGC
3.4
0.0034
P8 GC+1d culture
GTGCTATGCA (
3
)
2.3
0.0023
P8 GC+1d culture
AAAGGCCACT
(
2
)
1.1
0.0011
P8 GC+1d culture
GATGTAAAAA
(
4
)
1.1
0.0011
P8 GC+SHH+1d culture
GAAAAAAAAA (
204
)
77.3
0.0773
P8 GC+SHH+1d culture
CCCTTCTAGC
2.3
0.0023
P8 GC+SHH+1d culture
GAGGTGGGAG
(
7
)
2.3
0.0023
P8 GC+SHH+1d culture
GTGGGAGTCT
2.3
0.0023
P8 GC+SHH+1d culture
AAAGGCCACT
(
2
)
1.2
0.0012
P8 GC+SHH+1d culture
ATGTAAAAAA (
6
)
1.2
0.0012
P8 GC+SHH+1d culture
GATGTAAAAA
(
4
)
1.2
0.0012
P8 GC+SHH+1d culture
GCACATTAGG (
2
)
1.2
0.0012
P8 GC+SHH+1d culture
GGGGGGGGGC (
15
)
1.2
0.0012
P8 GC+SHH+1d culture
TACAGGGGCA (
2
)
1.2
0.0012
3T3 fibroblasts
CCCTTCTAGC
21
0.021
3T3 fibroblasts
GAGGTGGGAG
(
7
)
7
0.007
3T3 fibroblasts
GTGGGAGTCT
7
0.007
3T3 fibroblasts
GCACATTAGG (
2
)
3.5
0.0035
E15 cortex
GAAAAAAAAA (
204
)
54.4
0.0544
E15 cortex
GAAGGAAGGA
4.9
0.0049
E15 cortex
GTGCTATGCA (
3
)
4.9
0.0049
E15 cortex
GTGGATACAG (
6
)
4.9
0.0049
E15 cortex
GTGGGAGTCT
4.9
0.0049
P1 cortex
GAAAAAAAAA (
204
)
45.5
0.0455
P1 cortex
GTGGGAGTCT
13.6
0.0136
P1 cortex
GAGGTGGGAG
(
7
)
4.5
0.0045
P1 cortex
TCTATGAGGT
(
2
)
4.5
0.0045
Hypothalamus
GAAAAAAAAA (
204
)
67
0.067
Hypothalamus
TACAGGGGCA (
2
)
7.2
0.0072
Hypothalamus
GAGGTGGGAG
(
7
)
1.8
0.0018
Hypothalamus
GATGTAAAAA
(
4
)
1.8
0.0018
Hypothalamus
TCTATGAGGT
(
2
)
1.8
0.0018
Hypothalamus
TCTTTGGTGT
1.8
0.0018
E12.5 retina
GAAAAAAAAA (
204
)
46.9
0.0469
E12.5 retina
GATGTAAAAA
(
4
)
1.9
0.0019
E12.5 retina
GGGGGGGGGC (
15
)
1.9
0.0019
E12.5 retina
GTGGGAGTCT
1.9
0.0019
E12.5 retina
TATGCTTGAA
1.9
0.0019
E14.5 retina
GAAAAAAAAA (
204
)
34.6
0.0346
E14.5 retina
CCCTTCTAGC
1.8
0.0018
E14.5 retina
GAGGTGGGAG
(
7
)
1.8
0.0018
E14.5 retina
TATGCTTGAA
1.8
0.0018
E14.5 retina
TCTTTGGTGT
1.8
0.0018
E16.5 retina
GAAAAAAAAA (
204
)
23.5
0.0235
E16.5 retina
CCCTTCTAGC
5.4
0.0054
E16.5 retina
GATGTAACTT
1.8
0.0018
E16.5 retina
GCCACAGGAG (
2
)
1.8
0.0018
E16.5 retina
GTGGGAGTCT
1.8
0.0018
E16.5 retina
TCTTTGGTGT
1.8
0.0018
E18.5 retina
GAAAAAAAAA (
204
)
65.5
0.0655
E18.5 retina
GATGTAAAAA
(
4
)
5.5
0.0055
E18.5 retina
ATGTAAAAAA (
6
)
3.6
0.0036
E18.5 retina
CCCTTCTAGC
1.8
0.0018
E18.5 retina
GAAGGAAGGA
1.8
0.0018
E18.5 retina
GCCACAGGAG (
2
)
1.8
0.0018
E18.5 retina
GGGGGGGGGC (
15
)
1.8
0.0018
P0.5 retina
GAAAAAAAAA (
204
)
35.3
0.0353
P0.5 retina
GTGGGAGTCT
3.9
0.0039
P0.5 retina
CCCTTCTAGC
2
0.002
P0.5 retina
GTGGATACAG (
6
)
2
0.002
P2.5 retina
GAAAAAAAAA (
204
)
86.2
0.0862
P2.5 retina
GATGTAAAAA
(
4
)
3.5
0.0035
P2.5 retina
CCCTTCTAGC
1.8
0.0018
P2.5 retina
GAAGGAAGGA
1.8
0.0018
P4.5 retina
GAAAAAAAAA (
204
)
51.5
0.0515
P4.5 retina
ATGTAAAAAA (
6
)
5.9
0.0059
P4.5 retina
GTGGGAGTCT
4
0.004
P4.5 retina
GATGTAAAAA
(
4
)
2
0.002
P4.5 retina
GCCACAGGAG (
2
)
2
0.002
P4.5 retina
GTGGATACAG (
6
)
2
0.002
P4.5 retina
TCTATGAGGT
(
2
)
2
0.002
P6.5 retina
GAAAAAAAAA (
204
)
40
0.04
P6.5 retina
GATGTAAAAA
(
4
)
3.3
0.0033
P6.5 retina
GATGTAACTT
1.7
0.0017
P6.5 retina
GTGCTATGCA (
3
)
1.7
0.0017
P10.5 crx- retina
GAAAAAAAAA (
204
)
16.7
0.0167
P10.5 crx- retina
CCCTTCTAGC
5.6
0.0056
P10.5 crx- retina
GTGGGAGTCT
5.6
0.0056
P10.5 crx- retina
GATGTAAAAA
(
4
)
1.9
0.0019
P10.5 crx- retina
TATGCTTGAA
1.9
0.0019
P10.5 crx+ retina
GAAAAAAAAA (
204
)
42.3
0.0423
P10.5 crx+ retina
GATGTAAAAA
(
4
)
5.8
0.0058
P10.5 crx+ retina
GTGGGAGTCT
3.8
0.0038
P10.5 crx+ retina
CCCTTCTAGC
1.9
0.0019
P10.5 crx+ retina
GATGTAACTT
1.9
0.0019
P10.5 crx+ retina
GCCACAGGAG (
2
)
1.9
0.0019
P10.5 crx+ retina
GTGGATACAG (
6
)
1.9
0.0019
P10.5 crx+ retina
TCTATGAGGT
(
2
)
1.9
0.0019
Adult retinal
GAAAAAAAAA (
204
)
16.7
0.0167
Adult retinal
GCACATTAGG (
2
)
3.7
0.0037
Adult retinal
GTGGGAGTCT
3.7
0.0037
Adult retinal
GATGTAAAAA
(
4
)
1.9
0.0019
ONL
GAAAAAAAAA (
204
)
24.9
0.0249
ONL
GATGTAAAAA
(
4
)
5.7
0.0057
ONL
CCCTTCTAGC
1.9
0.0019
ONL
GAGGTGGGAG
(
7
)
1.9
0.0019
ONL
GGGGGGGGGC (
15
)
1.9
0.0019
ONL
TCTATGAGGT
(
2
)
1.9
0.0019
