Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.21938	Rps20	ribosomal protein S20	4		67427
Gene Ontology	cytosolic small ribosomal subunit (sensu Eukarya) | intracellular | protein biosynthesis | ribosome | RNA binding | small ribosomal subunit | structural constituent of ribosome
Human Homolog	RPS20[ribosomal protein S20]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 122 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTACCAAGA (2) 81.6 0.0816 P8 Cb GC GGCATTTTAA (2) 19.6 0.0196 P8 Cb GC CCTTCCTAGA (3) 3.3 0.0033 P8 Cb GC GCATTTAAAG 3.3 0.0033 P8 Cb GC TAGGTGCTGG (12) 3.3 0.0033 P8 Cb GC CCTACCAAAA (3) 1.6 0.0016 P8 Cb GC CGCACCGGTC 1.6 0.0016 P8 Cb GC GCATTTAAAA (2) 1.6 0.0016 Cb medulloblastoma CCTACCAAGA (2) 23.1 0.0231 Cb medulloblastoma CGCACCGGTC 6.9 0.0069 Cb medulloblastoma GGCATTTTAA (2) 4.6 0.0046 Cb medulloblastoma CCTTCCAAAA (7) 2.3 0.0023 Cb medulloblastoma GAATTTAAAG (2) 2.3 0.0023 Cb medulloblastoma GCATTTAAAA (2) 2.3 0.0023 Cb medulloblastoma GGGCCAATAA (6) 2.3 0.0023 P8 GC+1d culture CCTACCAAGA (2) 65.1 0.0651 P8 GC+1d culture CGCACCGGTC 2.3 0.0023 P8 GC+1d culture GGCATTTTAA (2) 2.3 0.0023 P8 GC+1d culture GCTGAGGGGC (7) 1.1 0.0011 P8 GC+1d culture TAGGTGCTGG (12) 1.1 0.0011 P8 GC+SHH+1d culture CCTACCAAGA (2) 59.7 0.0597 P8 GC+SHH+1d culture GGCATTTTAA (2) 7 0.007 P8 GC+SHH+1d culture CACAGTGTGC (2) 3.5 0.0035 P8 GC+SHH+1d culture CGCACCGGTC 3.5 0.0035 P8 GC+SHH+1d culture ACTAGTGCTT (80) 1.2 0.0012 P8 GC+SHH+1d culture CCTACCAAAA (3) 1.2 0.0012 P8 GC+SHH+1d culture CCTTCCTAGA (3) 1.2 0.0012 P8 GC+SHH+1d culture GCTGAGGCGC (2) 1.2 0.0012 P8 GC+SHH+1d culture GCTGAGGGGC (7) 1.2 0.0012 P8 GC+SHH+1d culture GGGCCAATAA (6) 1.2 0.0012 P8 GC+SHH+1d culture TGTTCAACTG 1.2 0.0012 3T3 fibroblasts CCTACCAAGA (2) 224.3 0.2243 3T3 fibroblasts CACAGTGTGC (2) 14 0.014 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts GCTGAGGCGC (2) 3.5 0.0035 E15 cortex CCTACCAAGA (2) 54.4 0.0544 E15 cortex GTCATAGCTG (590) 4.9 0.0049 P1 cortex CCTACCAAGA (2) 50 0.05 P1 cortex GGCATTTTAA (2) 9.1 0.0091 P1 cortex GCTGAGGCGC (2) 4.5 0.0045 Hypothalamus CCTACCAAGA (2) 18.1 0.0181 Hypothalamus TAGGTGCTGG (12) 5.4 0.0054 Hypothalamus GAATTTAAAA (12) 3.6 0.0036 Hypothalamus GCTGAGGCGC (2) 3.6 0.0036 Hypothalamus CGCACCGGTC 1.8 0.0018 Hypothalamus GCATTTAAAG 1.8 0.0018 Hypothalamus GGCATTTTAA (2) 1.8 0.0018 E12.5 retina CCTACCAAGA (2) 123.9 0.1239 E12.5 retina GCTGAGGCGC (2) 7.5 0.0075 E12.5 retina CGCACCGGTC 3.8 0.0038 E12.5 retina GGCATTTTAA (2) 3.8 0.0038 E12.5 retina TAGGTGCTGG (12) 3.8 0.0038 E12.5 retina ACTAGTGCTT (80) 1.9 0.0019 E12.5 retina GCATTTAAAA (2) 1.9 0.0019 E12.5 retina GCATTTAAAG 1.9 0.0019 E14.5 retina CCTACCAAGA (2) 12.8 0.0128 E14.5 retina TAGGTGCTGG (12) 9.1 0.0091 E14.5 retina CGCACCGGTC 7.3 0.0073 E14.5 retina GGCATTTTAA (2) 7.3 0.0073 E14.5 retina TGTTCAACTG 1.8 0.0018 E16.5 retina CCTACCAAGA (2) 29 0.029 E16.5 retina GGCATTTTAA (2) 10.9 0.0109 E16.5 retina TAGGTGCTGG (12) 7.2 0.0072 E16.5 retina CCTACCAAAA (3) 3.6 0.0036 E16.5 retina CGCACCGGTC 3.6 0.0036 E18.5 retina GGCATTTTAA (2) 38.2 0.0382 E18.5 retina CCTACCAAGA (2) 12.7 0.0127 E18.5 retina CGCACCGGTC 5.5 0.0055 E18.5 retina CCTACCAAAA (3) 1.8 0.0018 E18.5 retina GAATTTAAAA (12) 1.8 0.0018 E18.5 retina TAGGTGCTGG (12) 1.8 0.0018 P0.5 retina CCTACCAAGA (2) 125.6 0.1256 P0.5 retina CGCACCGGTC 3.9 0.0039 P0.5 retina GGCATTTTAA (2) 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina TAGGTGCTGG (12) 3.9 0.0039 P0.5 retina GCTGAGGCGC (2) 2 0.002 P2.5 retina CCTACCAAGA (2) 29.9 0.0299 P2.5 retina GGCATTTTAA (2) 8.8 0.0088 P2.5 retina TAGGTGCTGG (12) 5.3 0.0053 P2.5 retina CGCACCGGTC 3.5 0.0035 P2.5 retina CCTTCCAAAA (7) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina TGTTCAACTG 1.8 0.0018 P4.5 retina CCTACCAAGA (2) 29.7 0.0297 P4.5 retina GGCATTTTAA (2) 9.9 0.0099 P4.5 retina ACTAGTGCTT (80) 2 0.002 P4.5 retina CCTTCCAAAA (7) 2 0.002 P4.5 retina GAATTTAAAA (12) 2 0.002 P4.5 retina GCATTTAAAA (2) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P4.5 retina TAGGTGCTGG (12) 2 0.002 P6.5 retina CCTACCAAGA (2) 18.3 0.0183 P6.5 retina GGCATTTTAA (2) 10 0.01 P6.5 retina TAGGTGCTGG (12) 5 0.005 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina CGCACCGGTC 1.7 0.0017 P6.5 retina GAATTTAAAA (12) 1.7 0.0017 P6.5 retina GCAGATGGCT 1.7 0.0017 P6.5 retina GCTGAGGCGC (2) 1.7 0.0017 P10.5 crx- retina CCTACCAAGA (2) 96.6 0.0966 P10.5 crx- retina GGCATTTTAA (2) 3.7 0.0037 P10.5 crx- retina CGCACCGGTC 1.9 0.0019 P10.5 crx- retina GAATTTAAAA (12) 1.9 0.0019 P10.5 crx+ retina CCTACCAAGA (2) 26.9 0.0269 P10.5 crx+ retina TAGGTGCTGG (12) 5.8 0.0058 P10.5 crx+ retina GGCATTTTAA (2) 3.8 0.0038 P10.5 crx+ retina CGCACCGGTC 1.9 0.0019 P10.5 crx+ retina GCTGAGGGGC (7) 1.9 0.0019 Adult retinal CCTACCAAGA (2) 27.8 0.0278 Adult retinal ATGAACACTG (30) 11.1 0.0111 Adult retinal GGCATTTTAA (2) 3.7 0.0037 Adult retinal GAATTTAAAG (2) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal TAGGTGCTGG (12) 1.9 0.0019 ONL CCTACCAAGA (2) 30.6 0.0306 ONL ATGAACACTG (30) 13.4 0.0134 ONL GTCATAGCTG (590) 5.7 0.0057 ONL GCAGATGGCT 3.8 0.0038 ONL GCATTTAAAG 3.8 0.0038 ONL TAGGTGCTGG (12) 3.8 0.0038 ONL GGCATTTTAA (2) 1.9 0.0019