Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.2212	P4ha1	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	10		18451
Gene Ontology	endoplasmic reticulum | extracellular space | oxidoreductase activity | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | peptidyl-proline hydroxylation to 4-hydroxy-L-proline | procollagen-proline 4-dioxygenase activity | procollagen-proline 4-dioxygenase activity | protein metabolism
Human Homolog	P4HA1[procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide I]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 59 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGAAAAAAAA (81) 27.7 0.0277 P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 Cb medulloblastoma TGAAAAAAAA (81) 78.6 0.0786 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture TGAAAAAAAA (81) 26.3 0.0263 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture TCTTTAATCC (30) 2.3 0.0023 P8 GC+1d culture CAGACGCCAG 1.1 0.0011 P8 GC+SHH+1d culture TGAAAAAAAA (81) 57.4 0.0574 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture TCTTTAATCC (30) 4.7 0.0047 3T3 fibroblasts CAGACGCCAG 17.5 0.0175 3T3 fibroblasts TCTTTAATCC (30) 7 0.007 3T3 fibroblasts TGAAAAAAAA (81) 7 0.007 E15 cortex TGAAAAAAAA (81) 29.7 0.0297 E15 cortex TCTTTAATCC (30) 4.9 0.0049 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex TCTTTAATCC (30) 9.1 0.0091 P1 cortex TGAAAAAAAA (81) 4.5 0.0045 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus TGAAAAAAAA (81) 36.2 0.0362 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 E12.5 retina TGAAAAAAAA (81) 31.9 0.0319 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina CAGACGCCAG 1.9 0.0019 E14.5 retina TGAAAAAAAA (81) 49.2 0.0492 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina TCTTTAATCC (30) 21.9 0.0219 E16.5 retina TGAAAAAAAA (81) 16.3 0.0163 E16.5 retina TCTTTAATCC (30) 9.1 0.0091 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E18.5 retina TGAAAAAAAA (81) 74.6 0.0746 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina TCTTTAATCC (30) 1.8 0.0018 P0.5 retina TGAAAAAAAA (81) 15.7 0.0157 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina TCTTTAATCC (30) 2 0.002 P2.5 retina TGAAAAAAAA (81) 42.2 0.0422 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina TCTTTAATCC (30) 1.8 0.0018 P4.5 retina TGAAAAAAAA (81) 43.6 0.0436 P4.5 retina TCTTTAATCC (30) 9.9 0.0099 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina CAGACGCCAG 4 0.004 P6.5 retina TGAAAAAAAA (81) 33.3 0.0333 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina CAGACGCCAG 1.7 0.0017 P10.5 crx- retina TGAAAAAAAA (81) 9.3 0.0093 P10.5 crx- retina TCTTTAATCC (30) 1.9 0.0019 P10.5 crx+ retina TGAAAAAAAA (81) 19.2 0.0192 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 P10.5 crx+ retina TCTTTAATCC (30) 1.9 0.0019 Adult retinal TGAAAAAAAA (81) 13 0.013 Adult retinal TCTTTAATCC (30) 7.4 0.0074 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal CAGACGCCAG 1.9 0.0019 ONL TGAAAAAAAA (81) 19.2 0.0192 ONL TCTTTAATCC (30) 13.4 0.0134 ONL TTTTTTTTTT (433) 3.8 0.0038