Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.221275	Rtn1	reticulon 1	12	12 C2	104001
Mm.221275	4930441F12Rik	RIKEN cDNA 4930441F12 gene	12		78799
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 5 In Situ Hybridization Images

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SAGE Tags

Total 124 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTGACTTTAT (3) 35.9 0.0359 P8 Cb GC AGTGGGGGTG (6) 29.4 0.0294 P8 Cb GC TCCTTGGGTT (3) 3.3 0.0033 P8 Cb GC TAAATCAGCC (4) 1.6 0.0016 P8 Cb GC TGTATGTGTG (9) 1.6 0.0016 Cb medulloblastoma TTGACTTTAT (3) 41.6 0.0416 Cb medulloblastoma AGTGGGGGTG (6) 11.6 0.0116 Cb medulloblastoma AGGACTGCAA (3) 2.3 0.0023 Cb medulloblastoma CTGGCACCTT (3) 2.3 0.0023 Cb medulloblastoma TCCTTGGGTT (3) 2.3 0.0023 P8 GC+1d culture TTGACTTTAT (3) 118.7 0.1187 P8 GC+1d culture AGTGGGGGTG (6) 62.8 0.0628 P8 GC+1d culture AGGACTGCAA (3) 4.6 0.0046 P8 GC+1d culture ATGGTGAGAG (2) 4.6 0.0046 P8 GC+1d culture CACTTTTTTT (5) 3.4 0.0034 P8 GC+1d culture TAAATCAGCC (4) 3.4 0.0034 P8 GC+1d culture TCCGGCTTCT (2) 3.4 0.0034 P8 GC+1d culture TCCTTGGGTT (3) 2.3 0.0023 P8 GC+1d culture ATAAGCGATC (2) 1.1 0.0011 P8 GC+1d culture ATAAGGGATC (2) 1.1 0.0011 P8 GC+1d culture TAGACTTTAT (4) 1.1 0.0011 P8 GC+1d culture TGTATGTGTG (9) 1.1 0.0011 P8 GC+SHH+1d culture TTGACTTTAT (3) 79.6 0.0796 P8 GC+SHH+1d culture AGTGGGGGTG (6) 31.6 0.0316 P8 GC+SHH+1d culture TCCTTGGGTT (3) 7 0.007 P8 GC+SHH+1d culture CACTTTTTTT (5) 4.7 0.0047 P8 GC+SHH+1d culture TCCGGCTTCT (2) 2.3 0.0023 P8 GC+SHH+1d culture AGGACTGCAA (3) 1.2 0.0012 P8 GC+SHH+1d culture ATAAGCGATC (2) 1.2 0.0012 P8 GC+SHH+1d culture ATAAGGGATC (2) 1.2 0.0012 P8 GC+SHH+1d culture ATGGTGAGAG (2) 1.2 0.0012 P8 GC+SHH+1d culture CTGGCACCTT (3) 1.2 0.0012 P8 GC+SHH+1d culture TAAATCAGCC (4) 1.2 0.0012 P8 GC+SHH+1d culture TAGACTTTAT (4) 1.2 0.0012 3T3 fibroblasts TTGACTGTAT (3) 3.5 0.0035 E15 cortex AGTGGGGGTG (6) 29.7 0.0297 E15 cortex TCCTTGGGTT (3) 9.9 0.0099 E15 cortex CACTTTTTTT (5) 4.9 0.0049 E15 cortex TTGACTTTAT (3) 4.9 0.0049 P1 cortex TTGACTTTAT (3) 77.3 0.0773 P1 cortex AGTGGGGGTG (6) 36.4 0.0364 P1 cortex TTGACTGTAT (3) 9.1 0.0091 P1 cortex TCCGGCTTCT (2) 4.5 0.0045 P1 cortex TCCTTGGGTT (3) 4.5 0.0045 P1 cortex TGTATGTGTG (9) 4.5 0.0045 Hypothalamus TTGACTTTAT (3) 76.1 0.0761 Hypothalamus AGTGGGGGTG (6) 30.8 0.0308 Hypothalamus CACTTTTTTT (5) 25.4 0.0254 Hypothalamus TAAATCAGCC (4) 7.2 0.0072 Hypothalamus TCCGGCTTCT (2) 7.2 0.0072 Hypothalamus ATGGTGAGAG (2) 3.6 0.0036 Hypothalamus TCCTTGGGTT (3) 3.6 0.0036 Hypothalamus TGGCTCCTGA (3) 1.8 0.0018 E12.5 retina TTGACTTTAT (3) 13.1 0.0131 E12.5 retina AGTGGGGGTG (6) 1.9 0.0019 E12.5 retina CTGGCACCTT (3) 1.9 0.0019 E12.5 retina TAGACTTTAT (4) 1.9 0.0019 E14.5 retina TTGACTTTAT (3) 41.9 0.0419 E14.5 retina AGTGGGGGTG (6) 7.3 0.0073 E14.5 retina TCCGGCTTCT (2) 7.3 0.0073 E14.5 retina ATAAGCGATC (2) 3.6 0.0036 E14.5 retina ATGGTGAGAG (2) 3.6 0.0036 E14.5 retina CACTTTTTTT (5) 3.6 0.0036 E14.5 retina TAAATCAGCC (4) 3.6 0.0036 E14.5 retina TGTATGTGTG (9) 1.8 0.0018 E14.5 retina TTGACTTTTT (4) 1.8 0.0018 E16.5 retina TTGACTTTAT (3) 63.4 0.0634 E16.5 retina AGTGGGGGTG (6) 30.8 0.0308 E16.5 retina ATGGTGAGAG (2) 9.1 0.0091 E16.5 retina TCCTTGGGTT (3) 7.2 0.0072 E16.5 retina ATAAGCGATC (2) 1.8 0.0018 E16.5 retina CACTTTTTTT (5) 1.8 0.0018 E16.5 retina TAAATCAGCC (4) 1.8 0.0018 E16.5 retina TCCGGCTTCT (2) 1.8 0.0018 E16.5 retina TGGCTCCTGA (3) 1.8 0.0018 E16.5 retina TGTATGTGTG (9) 1.8 0.0018 E18.5 retina TTGACTTTAT (3) 52.8 0.0528 E18.5 retina CACTTTTTTT (5) 7.3 0.0073 E18.5 retina TAAATCAGCC (4) 5.5 0.0055 E18.5 retina AGTGGGGGTG (6) 1.8 0.0018 E18.5 retina ATGGTGAGAG (2) 1.8 0.0018 E18.5 retina TCCGGCTTCT (2) 1.8 0.0018 E18.5 retina TCCTTGGGTT (3) 1.8 0.0018 E18.5 retina TGTATGTGTG (9) 1.8 0.0018 P0.5 retina TTGACTTTAT (3) 25.5 0.0255 P0.5 retina AGTGGGGGTG (6) 19.6 0.0196 P0.5 retina TAAATCAGCC (4) 7.9 0.0079 P0.5 retina TCCTTGGGTT (3) 3.9 0.0039 P0.5 retina ATAAGCGATC (2) 2 0.002 P0.5 retina CACTTTTTTT (5) 2 0.002 P2.5 retina TTGACTTTAT (3) 33.4 0.0334 P2.5 retina AGTGGGGGTG (6) 12.3 0.0123 P2.5 retina ATAAGGGATC (2) 1.8 0.0018 P2.5 retina TAAATCAGCC (4) 1.8 0.0018 P2.5 retina TGGCTCCTGA (3) 1.8 0.0018 P4.5 retina TTGACTTTAT (3) 31.7 0.0317 P4.5 retina AGTGGGGGTG (6) 7.9 0.0079 P4.5 retina TCCTTGGGTT (3) 4 0.004 P4.5 retina ATAAGCGATC (2) 2 0.002 P4.5 retina CACTTTTTTT (5) 2 0.002 P4.5 retina TAAATCAGCC (4) 2 0.002 P4.5 retina TGGCTCCTGA (3) 2 0.002 P6.5 retina AGTGGGGGTG (6) 21.7 0.0217 P6.5 retina TTGACTTTAT (3) 21.7 0.0217 P6.5 retina TAAATCAGCC (4) 3.3 0.0033 P6.5 retina TCCTTGGGTT (3) 1.7 0.0017 P6.5 retina TTGACTTTTT (4) 1.7 0.0017 P10.5 crx- retina AGTGGGGGTG (6) 44.6 0.0446 P10.5 crx- retina TTGACTTTAT (3) 14.9 0.0149 P10.5 crx- retina TCCGGCTTCT (2) 1.9 0.0019 P10.5 crx- retina TCCTTGGGTT (3) 1.9 0.0019 P10.5 crx+ retina AGTGGGGGTG (6) 19.2 0.0192 P10.5 crx+ retina TTGACTTTAT (3) 15.4 0.0154 P10.5 crx+ retina CACTTTTTTT (5) 1.9 0.0019 Adult retinal AGTGGGGGTG (6) 16.7 0.0167 Adult retinal TTGACTTTAT (3) 9.3 0.0093 Adult retinal TCCTTGGGTT (3) 1.9 0.0019 Adult retinal TGTATGTGTG (9) 1.9 0.0019 Adult retinal TTGACTGTAT (3) 1.9 0.0019 Adult retinal TTGACTTTTT (4) 1.9 0.0019 ONL TTGACTTTAT (3) 11.5 0.0115 ONL AGTGGGGGTG (6) 1.9 0.0019 ONL TGTATGTGTG (9) 1.9 0.0019 ONL TTGACTTTTT (4) 1.9 0.0019