Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.221452	AI317230	EST AI317230	14	14 60.0 cM	30912
Mm.221452	Kpnb3	karyopherin (importin) beta 3	14		70572
Gene Ontology	cytoplasm | GTPase inhibitor activity | intracellular protein transport | NLS-bearing substrate-nucleus import | nuclear localization sequence binding | nuclear pore | nucleus | protein binding | protein transport | protein transporter activity | protein-nucleus import, docking | RAN protein binding | transport
Human Homolog	RANBP5[RAN binding protein 5]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 192 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC TCCACACTGC (7) 11.4 0.0114 P8 Cb GC TCTGGCAGTC (3) 11.4 0.0114 P8 Cb GC AAGACCCCTG (4) 1.6 0.0016 P8 Cb GC GCTGCCCTAC (5) 1.6 0.0016 P8 Cb GC GGCCAGGGAT (7) 1.6 0.0016 P8 Cb GC GTGCAGTTTG (6) 1.6 0.0016 P8 Cb GC TTCTGCAGTC (3) 1.6 0.0016 P8 Cb GC TTTTAATAGA (2) 1.6 0.0016 P8 Cb GC TTTTCATAGA (2) 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma CATTCCTTTG (8) 9.2 0.0092 Cb medulloblastoma TCCACACTGC (7) 6.9 0.0069 Cb medulloblastoma GGAAGTGTTG (7) 4.6 0.0046 Cb medulloblastoma TCTGGCAGTC (3) 4.6 0.0046 Cb medulloblastoma AGCTTCTGAA (4) 2.3 0.0023 Cb medulloblastoma GGCCAGGGAT (7) 2.3 0.0023 Cb medulloblastoma GGCTGCCCCC (3) 2.3 0.0023 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture TCCACACTGC (7) 8 0.008 P8 GC+1d culture CAGTGACTCG (2) 3.4 0.0034 P8 GC+1d culture GGCTGCCCCC (3) 3.4 0.0034 P8 GC+1d culture ATTAAGGAAA (7) 2.3 0.0023 P8 GC+1d culture GCCTGCCCCC (6) 2.3 0.0023 P8 GC+1d culture GCTGCCCTAC (5) 2.3 0.0023 P8 GC+1d culture GGAAGTGTTG (7) 2.3 0.0023 P8 GC+1d culture GGCCAGGGAT (7) 2.3 0.0023 P8 GC+1d culture AAGACCCCTG (4) 1.1 0.0011 P8 GC+1d culture GATCTCATCA (3) 1.1 0.0011 P8 GC+1d culture GTGCAGTTTG (6) 1.1 0.0011 P8 GC+1d culture TGTACTCACT (3) 1.1 0.0011 P8 GC+1d culture TTCTGCAGTC (3) 1.1 0.0011 P8 GC+1d culture TTTTAATAGA (2) 1.1 0.0011 P8 GC+1d culture TTTTCATAGA (2) 1.1 0.0011 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture TCTGGCAGTC (3) 12.9 0.0129 P8 GC+SHH+1d culture GGAAGTGTTG (7) 5.9 0.0059 P8 GC+SHH+1d culture GGCCAGGGAT (7) 4.7 0.0047 P8 GC+SHH+1d culture TCCACACTGC (7) 4.7 0.0047 P8 GC+SHH+1d culture CAGTGACTCG (2) 2.3 0.0023 P8 GC+SHH+1d culture GCCTGCCCCC (6) 2.3 0.0023 P8 GC+SHH+1d culture GCTGCCCTAC (5) 2.3 0.0023 P8 GC+SHH+1d culture AGCTTCTGAA (4) 1.2 0.0012 P8 GC+SHH+1d culture CATTCCTTTG (8) 1.2 0.0012 P8 GC+SHH+1d culture GTGCAGTTTG (6) 1.2 0.0012 P8 GC+SHH+1d culture TTCTGCAGTC (3) 1.2 0.0012 P8 GC+SHH+1d culture TTTTAAAGAA (5) 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts TCTGGCAGTC (3) 10.5 0.0105 3T3 fibroblasts TCCACACTGC (7) 7 0.007 3T3 fibroblasts GCCTGCCCCC (6) 3.5 0.0035 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex TCTGGCAGTC (3) 19.8 0.0198 E15 cortex TCCACACTGC (7) 9.9 0.0099 E15 cortex TTCTGCAGTC (3) 9.9 0.0099 E15 cortex ATTAAGGAAA (7) 4.9 0.0049 E15 cortex CAGTTGCTGG (10) 4.9 0.0049 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex TCCACACTGC (7) 13.6 0.0136 P1 cortex GCTGCCCTAC (5) 9.1 0.0091 P1 cortex TCTGGCAGTC (3) 9.1 0.0091 P1 cortex GCTGCCCCTA (5) 4.5 0.0045 P1 cortex GGCCAGGGAT (7) 4.5 0.0045 P1 cortex TTCTGCAGTC (3) 4.5 0.0045 P1 cortex TTTTAATAGA (2) 4.5 0.0045 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus GCTGCCCTAC (5) 5.4 0.0054 Hypothalamus TCCACACTGC (7) 3.6 0.0036 Hypothalamus CAGTTGCTGG (10) 1.8 0.0018 Hypothalamus CATTCCTTTG (8) 1.8 0.0018 Hypothalamus GGCCAGGGAT (7) 1.8 0.0018 Hypothalamus GGCTGCCCCC (3) 1.8 0.0018 Hypothalamus GGGCAGGATG (5) 1.8 0.0018 Hypothalamus GTGCAGTTTG (6) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina TCTGGCAGTC (3) 18.8 0.0188 E12.5 retina GCAGTCCACC (2) 5.6 0.0056 E12.5 retina GGAAGTGTTG (7) 3.8 0.0038 E12.5 retina GGCCAGGGAT (7) 3.8 0.0038 E12.5 retina TTCTGCAGTC (3) 3.8 0.0038 E12.5 retina GATCTCATCA (3) 1.9 0.0019 E12.5 retina GCTGCCCCTA (5) 1.9 0.0019 E12.5 retina TCCACACTGC (7) 1.9 0.0019 E12.5 retina TGTACTCACT (3) 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina TCTGGCAGTC (3) 10.9 0.0109 E14.5 retina TCCACACTGC (7) 9.1 0.0091 E14.5 retina GGCCAGGGAT (7) 5.5 0.0055 E14.5 retina AAGACCCCTG (4) 1.8 0.0018 E14.5 retina GCAGTCCACC (2) 1.8 0.0018 E14.5 retina GCCTGCCCCC (6) 1.8 0.0018 E14.5 retina TTCTGCAGTC (3) 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina TCCACACTGC (7) 7.2 0.0072 E16.5 retina TCTGGCAGTC (3) 5.4 0.0054 E16.5 retina GGAAGTGTTG (7) 3.6 0.0036 E16.5 retina GGCCAGGGAT (7) 3.6 0.0036 E16.5 retina CAGTTGCTGG (10) 1.8 0.0018 E16.5 retina GCTGCCCTAC (5) 1.8 0.0018 E16.5 retina GGCTGCCCCC (3) 1.8 0.0018 E16.5 retina TTCTGCAGTC (3) 1.8 0.0018 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina TCTGGCAGTC (3) 10.9 0.0109 E18.5 retina TCCACACTGC (7) 9.1 0.0091 E18.5 retina GCTGCCCTAC (5) 7.3 0.0073 E18.5 retina AAACGGATGT (2) 3.6 0.0036 E18.5 retina GGCCAGGGAT (7) 1.8 0.0018 E18.5 retina GGCTGCCCCC (3) 1.8 0.0018 E18.5 retina TTTTAAAGAA (5) 1.8 0.0018 E18.5 retina TTTTAATAGA (2) 1.8 0.0018 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina TCCACACTGC (7) 13.7 0.0137 P0.5 retina TCTGGCAGTC (3) 11.8 0.0118 P0.5 retina GCTGCCCTAC (5) 5.9 0.0059 P0.5 retina ATTAAGGAAA (7) 3.9 0.0039 P0.5 retina GCAGTCCACC (2) 3.9 0.0039 P0.5 retina GGAAGTGTTG (7) 3.9 0.0039 P0.5 retina TTCTGCAGTC (3) 3.9 0.0039 P0.5 retina GCCTGCCCCC (6) 2 0.002 P0.5 retina TTTTAATAGA (2) 2 0.002 P0.5 retina TTTTCATAGA (2) 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina TCTGGCAGTC (3) 10.6 0.0106 P2.5 retina TCCACACTGC (7) 8.8 0.0088 P2.5 retina GGCCAGGGAT (7) 5.3 0.0053 P2.5 retina GGAAGTGTTG (7) 3.5 0.0035 P2.5 retina AAACGGATGT (2) 1.8 0.0018 P2.5 retina AAGACCCCTG (4) 1.8 0.0018 P2.5 retina CATTCCTTTG (8) 1.8 0.0018 P2.5 retina GCAGTCCACC (2) 1.8 0.0018 P2.5 retina GCCTGCCCCC (6) 1.8 0.0018 P2.5 retina GTGCAGTTTG (6) 1.8 0.0018 P2.5 retina TTTTAAAGAA (5) 1.8 0.0018 P2.5 retina TTTTAATAGA (2) 1.8 0.0018 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina GGAAGTGTTG (7) 9.9 0.0099 P4.5 retina TCCACACTGC (7) 5.9 0.0059 P4.5 retina GCTGCCCTAC (5) 4 0.004 P4.5 retina AGCTTCTGAA (4) 2 0.002 P4.5 retina ATTAAGGAAA (7) 2 0.002 P4.5 retina CATTCCTTTG (8) 2 0.002 P4.5 retina TCTGGCAGTC (3) 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina GGAAGTGTTG (7) 16.7 0.0167 P6.5 retina GGCCAGGGAT (7) 11.7 0.0117 P6.5 retina TCCACACTGC (7) 10 0.01 P6.5 retina GCTGCCCTAC (5) 3.3 0.0033 P6.5 retina GTGCAGTTTG (6) 3.3 0.0033 P6.5 retina TCTGGCAGTC (3) 3.3 0.0033 P6.5 retina AAACGGATGT (2) 1.7 0.0017 P6.5 retina CAGTTGCTGG (10) 1.7 0.0017 P6.5 retina CATTCCTTTG (8) 1.7 0.0017 P6.5 retina GCAGTCCACC (2) 1.7 0.0017 P6.5 retina GGGCAGGATG (5) 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina GGAAGTGTTG (7) 9.3 0.0093 P10.5 crx- retina TCTGGCAGTC (3) 5.6 0.0056 P10.5 crx- retina TCCACACTGC (7) 3.7 0.0037 P10.5 crx- retina ATTAAGGAAA (7) 1.9 0.0019 P10.5 crx- retina CAGTTGCTGG (10) 1.9 0.0019 P10.5 crx- retina GCTGCCCCTA (5) 1.9 0.0019 P10.5 crx- retina GGCCAGGGAT (7) 1.9 0.0019 P10.5 crx- retina GTGCAGTTTG (6) 1.9 0.0019 P10.5 crx- retina TTCTGCAGTC (3) 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina TCTGGCAGTC (3) 17.3 0.0173 P10.5 crx+ retina GGAAGTGTTG (7) 7.7 0.0077 P10.5 crx+ retina TCCACACTGC (7) 7.7 0.0077 P10.5 crx+ retina TTCTGCAGTC (3) 3.8 0.0038 P10.5 crx+ retina AAACGGATGT (2) 1.9 0.0019 P10.5 crx+ retina GATCTCATCA (3) 1.9 0.0019 P10.5 crx+ retina GCAGTCCACC (2) 1.9 0.0019 P10.5 crx+ retina GGCCAGGGAT (7) 1.9 0.0019 P10.5 crx+ retina GGCTGCCCCC (3) 1.9 0.0019 P10.5 crx+ retina GGGCAGGATG (5) 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal GAGAGCTTGC (5) 9.3 0.0093 Adult retinal GGAAGTGTTG (7) 5.6 0.0056 Adult retinal GGCCAGGGAT (7) 3.7 0.0037 Adult retinal TCCACACTGC (7) 3.7 0.0037 Adult retinal AAGACCCCTG (4) 1.9 0.0019 Adult retinal GCTGCCCCTA (5) 1.9 0.0019 Adult retinal GCTGCCCTAC (5) 1.9 0.0019 Adult retinal GGCTGCCCCC (3) 1.9 0.0019 Adult retinal TCTGGCAGTC (3) 1.9 0.0019 Adult retinal TTTTAAAGAA (5) 1.9 0.0019 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL GGAAGTGTTG (7) 9.6 0.0096 ONL GAGAGCTTGC (5) 5.7 0.0057 ONL GGCCAGGGAT (7) 5.7 0.0057 ONL TCTGGCAGTC (3) 3.8 0.0038 ONL TTTTAAAGAA (5) 1.9 0.0019