Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.223509
Spata1
spermatogenesis associated 1
3
70951
Human Homolog
SPATA1[spermatogenesis associated 1]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 39 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCTTTAATCC (
355
)
52.2
0.0522
Cb medulloblastoma
CCTTTAATCC (
355
)
41.6
0.0416
Cb medulloblastoma
TAGAAGAGCT
(
2
)
4.6
0.0046
Cb medulloblastoma
TTTTTTATGT (
2
)
2.3
0.0023
P8 GC+1d culture
CCTTTAATCC (
355
)
32
0.032
P8 GC+1d culture
TAGAAGAGCT
(
2
)
1.1
0.0011
P8 GC+SHH+1d culture
CCTTTAATCC (
355
)
25.8
0.0258
P8 GC+SHH+1d culture
TAGAAGAGCT
(
2
)
1.2
0.0012
3T3 fibroblasts
CCTTTAATCC (
355
)
70.1
0.0701
E15 cortex
CCTTTAATCC (
355
)
54.4
0.0544
P1 cortex
CCTTTAATCC (
355
)
154.5
0.1545
P1 cortex
TAGAAGAGCT
(
2
)
4.5
0.0045
Hypothalamus
CCTTTAATCC (
355
)
19.9
0.0199
Hypothalamus
TAGAAGAGCT
(
2
)
1.8
0.0018
E12.5 retina
CCTTTAATCC (
355
)
75.1
0.0751
E12.5 retina
ATCTGGATGG (
2
)
5.6
0.0056
E14.5 retina
CCTTTAATCC (
355
)
120.3
0.1203
E16.5 retina
CCTTTAATCC (
355
)
68.8
0.0688
E18.5 retina
CCTTTAATCC (
355
)
23.6
0.0236
E18.5 retina
ATCTGGATGG (
2
)
1.8
0.0018
P0.5 retina
CCTTTAATCC (
355
)
72.6
0.0726
P0.5 retina
ATCTGGATGG (
2
)
2
0.002
P0.5 retina
TTTTTTATGT (
2
)
2
0.002
P2.5 retina
CCTTTAATCC (
355
)
70.4
0.0704
P4.5 retina
CCTTTAATCC (
355
)
43.6
0.0436
P4.5 retina
TAGAAGAGCT
(
2
)
7.9
0.0079
P4.5 retina
TTTTTTATGT (
2
)
5.9
0.0059
P4.5 retina
ATCTGGATGG (
2
)
2
0.002
P6.5 retina
CCTTTAATCC (
355
)
70
0.07
P6.5 retina
TAGAAGAGCT
(
2
)
8.3
0.0083
P10.5 crx- retina
CCTTTAATCC (
355
)
63.2
0.0632
P10.5 crx- retina
TAGAAGAGCT
(
2
)
1.9
0.0019
P10.5 crx+ retina
CCTTTAATCC (
355
)
38.4
0.0384
P10.5 crx+ retina
TAGAAGAGCT
(
2
)
7.7
0.0077
P10.5 crx+ retina
ATCTGGATGG (
2
)
1.9
0.0019
Adult retinal
CCTTTAATCC (
355
)
129.6
0.1296
Adult retinal
TAGAAGAGCT
(
2
)
1.9
0.0019
ONL
CCTTTAATCC (
355
)
84.3
0.0843
ONL
TAGAAGAGCT
(
2
)
1.9
0.0019
