Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.22665	Hdac5	histone deacetylase 5	11		15184
Gene Ontology	chromatin modification | cytoplasm | histone deacetylase activity | hydrolase activity | negative regulation of transcription from Pol II promoter | nucleus | protein binding | regulation of transcription, DNA-dependent | transcription corepressor activity | transcriptional repressor activity
Human Homolog	HDAC5[histone deacetylase 5]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 99 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAGCAGCAGC GAGCAGGAGC (2) GGCTTCTCTG (2) GGGATTCTGC GGGGTGACAG 22.8 0.0228 Cb medulloblastoma GAGCAGGAGC (2) GCGCTAACAG GGCTCCTCTG (2) GGGATTCTGC GGGCTCAAGG (2) GGGGTGACAG 53.1 0.0531 P8 GC+1d culture GAGCAGGAGC (2) GGGATTCTGC GGGGTGACAG 21.6 0.0216 P8 GC+SHH+1d culture GAGCAGGAGC (2) GCGCTCACAG GGGATTCTGC GGGCTCAAGG (2) GGGGTGACAG 31.7 0.0317 3T3 fibroblasts AGGACGGTGG (2) GAGCAGGAGC (2) 7 0.007 E15 cortex AGGACGGTGG (2) GAGCAGGAGC (2) GCGCTAACAG GGGATTCTGC GGGGTGACAG 69.2 0.0692 P1 cortex GCCTCCCTCC (2) GCGCTAACAG 18.1 0.0181 Hypothalamus CAGCAGCAGC GAGCAGGAGC (2) GCCCTGCTTT GCGCTAACAG GGCTCCTCTG (2) GGGGTGACAG GGGTCCTCTG (3) 39.7 0.0397 E12.5 retina GAGCAGGAGC (2) GCGCTAACAG GGGGTGACAG 20.6 0.0206 E14.5 retina GAGCAGGAGC (2) GCGCTAACAG GCGCTCACAG GGCTCCTCTG (2) GGGGTGACAG 21.8 0.0218 E16.5 retina GAGCAGGAGC (2) GAGCTCACAA GCCTCCCTCC (2) GCGCTAACAG GGCTCCTCTG (2) GGGCTCAAGG (2) GGGGGTGGAG (2) GGGGTGACAG 39.8 0.0398 E18.5 retina GAGCAGGAGC (2) GCCTCCCTCC (2) GCGCTAACAG GCGCTCACAG GGCTTCTCTG (2) GGGATTCTGC GGGGTGACAG 34.5 0.0345 P0.5 retina GAGCAGGAGC (2) GGGATTCTGC GGGGTGACAG GGGTCCTCTG (3) 29.5 0.0295 P2.5 retina GAGCAGGAGC (2) GCGCTAACAG GGGATTCTGC GGGGTGACAG 28.1 0.0281 P4.5 retina GAGCAGGAGC (2) GCCCTGCTTT GCGCTAACAG GGGATTCTGC GGGTCCTCTG (3) 43.6 0.0436 P6.5 retina AGGACGGTGG (2) GAGCAGGAGC (2) GCGCTAACAG GCGCTCACAG GGGGTGACAG GGGTCCTCTG (3) 48.4 0.0484 P10.5 crx- retina GAGCAGGAGC (2) GCGCTAACAG GGGATTCTGC GGGGTGACAG 53.9 0.0539 P10.5 crx+ retina GAGCAGGAGC (2) GAGCTCACAA GCCCTGCTTT GCGCTAACAG GCGCTCACAG GGGGGTGGAG (2) GGGGTGACAG 59.5 0.0595 Adult retinal GAGCAGGAGC (2) GCGCTAACAG GGCTCCTCTG (2) GGGATTCTGC GGGGGTGGAG (2) GGGGTGACAG GGGTCCTCTG (3) 44.6 0.0446 ONL GAGCAGGAGC (2) GCGCTAACAG GGGCTCAAGG (2) GGGGTGACAG 19.1 0.0191