Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.22668	Hmgcl	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	4	4 65.6 cM	15356
Gene Ontology	catalytic activity | extracellular space | hydroxymethylglutaryl-CoA lyase activity | lyase activity | mitochondrion
Human Homolog	HMGCL[3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase (hydroxymethylglutaricaciduria)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 49 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATTCCGAATT (2) CCTGATGGCT TTTTTTTTTT (2) 8.1 0.0081 Cb medulloblastoma GGGATGAGGG TTTTTTTTTT (2) 6.9 0.0069 P8 GC+1d culture CTGAAAGGGC CTGAATGGCT (2) TTTTTTTTTT (2) 17.1 0.0171 P8 GC+SHH+1d culture CTGAATGGCT (2) TTTTTTTTTT (2) 10.6 0.0106 3T3 fibroblasts CTGAATGGCT (2) 3.5 0.0035 E15 cortex TTTTTTTTTT (2) 4.9 0.0049 P1 cortex TTTTTTTTTT (2) 4.5 0.0045 Hypothalamus GGGATGAGGG TTTTTTTTTT (2) 12.6 0.0126 E12.5 retina CCTGATGGCT CTGAAAGGGC TTTTTTTTTT (2) 13.2 0.0132 E14.5 retina AAAGGCTTTG (2) GGGATGAGGG TTTTTTTTTT (2) 29.1 0.0291 E16.5 retina AAAGGCTTTG (2) CCTGATGGCT CTGAAAGGGC CTGAATGGCT (2) GGGATGAGGG TTTTTTTTTT (2) 16.2 0.0162 E18.5 retina GGGATGAGGG TTTTTTTTTT (2) 12.7 0.0127 P0.5 retina CTGAAAGGGC CTGAATGGCT (2) TTTTTTTTTT (2) 13.8 0.0138 P2.5 retina AAAGGCTTTG (2) TTTTTTTTTT (2) 8.8 0.0088 P4.5 retina ATTCCGAATT (2) CTGAAAGGGC TTTTTTTTTT (2) 15.9 0.0159 P6.5 retina ATTCCGAATT (2) CTGAAAGGGC TTTTTTTTTT (2) 13.3 0.0133 P10.5 crx- retina CTGAAAGGGC 1.9 0.0019 P10.5 crx+ retina AAGTGCCTGT (2) ATAAGGGCTA TTTTTTTTTT (2) 11.4 0.0114 Adult retinal AAGTGCCTGT (2) CTGAATGGCT (2) TTTTTTTTTT (2) 11.2 0.0112 ONL ATTCCGAATT (2) TTTTTTTTTT (2) 7.6 0.0076