Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.22723	Rpl23a	ribosomal protein L23a	11		268449
Gene Ontology	intracellular | protein biosynthesis | ribonucleoprotein complex | ribosome | RNA binding | rRNA binding | structural constituent of ribosome
Human Homolog	RPL23A[ribosomal protein L23a]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 163 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAAAAAAAAA (204) 45.7 0.0457 P8 Cb GC AAGAAAATAG (6) 42.4 0.0424 P8 Cb GC GCTGACTCCG (3) 9.8 0.0098 P8 Cb GC AGGAAAATAG 1.6 0.0016 P8 Cb GC GGGAAAAAAA (36) 1.6 0.0016 P8 Cb GC GTGGATGTCA (4) 1.6 0.0016 P8 Cb GC TGCCGCCATT (2) 1.6 0.0016 Cb medulloblastoma GAAAAAAAAA (204) 173.4 0.1734 Cb medulloblastoma GGGAAAAAAA (36) 92.5 0.0925 Cb medulloblastoma GTGAAAACAA (4) 27.7 0.0277 Cb medulloblastoma AAGAAAATAG (6) 16.2 0.0162 Cb medulloblastoma AAAAAAAAGA (7) 6.9 0.0069 Cb medulloblastoma GCTGACTCCG (3) 6.9 0.0069 Cb medulloblastoma TAAATAAAAA (6) 6.9 0.0069 Cb medulloblastoma GTGGATGTCA (4) 2.3 0.0023 P8 GC+1d culture GAAAAAAAAA (204) 41.1 0.0411 P8 GC+1d culture AAGAAAATAG (6) 40 0.04 P8 GC+1d culture TGCCGCCATT (2) 9.1 0.0091 P8 GC+1d culture TAAATAAAAA (6) 5.7 0.0057 P8 GC+1d culture AAAAAAAAGA (7) 2.3 0.0023 P8 GC+1d culture GCTGACTCCG (3) 2.3 0.0023 P8 GC+1d culture AAGAAAATAC (4) 1.1 0.0011 P8 GC+1d culture GGCTGGTTCC 1.1 0.0011 P8 GC+1d culture GGGAAAAAAA (36) 1.1 0.0011 P8 GC+1d culture GTGGATGTCA (4) 1.1 0.0011 P8 GC+1d culture TGTGGAAACA (7) 1.1 0.0011 P8 GC+SHH+1d culture GAAAAAAAAA (204) 77.3 0.0773 P8 GC+SHH+1d culture AAGAAAATAG (6) 43.3 0.0433 P8 GC+SHH+1d culture TGTGGAAACA (7) 5.9 0.0059 P8 GC+SHH+1d culture GCTGACTCCG (3) 4.7 0.0047 P8 GC+SHH+1d culture GTGAAAACAA (4) 4.7 0.0047 P8 GC+SHH+1d culture TAAATAAAAA (6) 4.7 0.0047 P8 GC+SHH+1d culture GTAAGAAAAA (5) 2.3 0.0023 P8 GC+SHH+1d culture TGCCGCCATT (2) 2.3 0.0023 P8 GC+SHH+1d culture AAAAAAAAGA (7) 1.2 0.0012 P8 GC+SHH+1d culture GGCTGGTTCC 1.2 0.0012 P8 GC+SHH+1d culture GGGAAAAAAA (36) 1.2 0.0012 P8 GC+SHH+1d culture GTGGATGTCA (4) 1.2 0.0012 3T3 fibroblasts AAGAAAATAG (6) 17.5 0.0175 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts GCTGACTCCG (3) 7 0.007 3T3 fibroblasts TGTGGAAACA (7) 3.5 0.0035 E15 cortex GAAAAAAAAA (204) 54.4 0.0544 E15 cortex AAGAAAATAG (6) 14.8 0.0148 E15 cortex GTCATAGCTG (590) 4.9 0.0049 E15 cortex GTGGATGTCA (4) 4.9 0.0049 E15 cortex TGCCGCCATT (2) 4.9 0.0049 E15 cortex TGTGGAAACA (7) 4.9 0.0049 P1 cortex AAGAAAATAG (6) 59.1 0.0591 P1 cortex GAAAAAAAAA (204) 45.5 0.0455 P1 cortex GTGGATGTCA (4) 9.1 0.0091 P1 cortex AAGAAAATAC (4) 4.5 0.0045 P1 cortex GCTGACTCCG (3) 4.5 0.0045 P1 cortex GGGAAAAAAA (36) 4.5 0.0045 P1 cortex TAAATAAAAA (6) 4.5 0.0045 P1 cortex TGTGGAAACA (7) 4.5 0.0045 Hypothalamus GAAAAAAAAA (204) 67 0.067 Hypothalamus GGGAAAAAAA (36) 41.7 0.0417 Hypothalamus AAGAAAATAG (6) 18.1 0.0181 Hypothalamus TGCCGCCATT (2) 7.2 0.0072 Hypothalamus TAAATAAAAA (6) 3.6 0.0036 Hypothalamus GTGGATGTCA (4) 1.8 0.0018 E12.5 retina GAAAAAAAAA (204) 46.9 0.0469 E12.5 retina AAGAAAATAG (6) 31.9 0.0319 E12.5 retina GCTGACTCCG (3) 7.5 0.0075 E12.5 retina TGCCGCCATT (2) 5.6 0.0056 E12.5 retina TAAATAAAAA (6) 3.8 0.0038 E12.5 retina AAAAAAAAGA (7) 1.9 0.0019 E12.5 retina GTGAAAACAA (4) 1.9 0.0019 E12.5 retina GTGGATGTCA (4) 1.9 0.0019 E12.5 retina TGTGGAAACA (7) 1.9 0.0019 E14.5 retina GAAAAAAAAA (204) 34.6 0.0346 E14.5 retina AAGAAAATAG (6) 32.8 0.0328 E14.5 retina GCTGACTCCG (3) 5.5 0.0055 E14.5 retina AAAAAAAAGA (7) 3.6 0.0036 E14.5 retina GTGAAAACAA (4) 3.6 0.0036 E14.5 retina TAAATAAAAA (6) 3.6 0.0036 E14.5 retina GGGAAAAAAA (36) 1.8 0.0018 E16.5 retina AAGAAAATAG (6) 38 0.038 E16.5 retina GAAAAAAAAA (204) 23.5 0.0235 E16.5 retina GCTGACTCCG (3) 7.2 0.0072 E16.5 retina GGGAAAAAAA (36) 3.6 0.0036 E16.5 retina GTAAGAAAAA (5) 1.8 0.0018 E16.5 retina GTGAAAACAA (4) 1.8 0.0018 E16.5 retina TGCCGCCATT (2) 1.8 0.0018 E16.5 retina TGTGGAAACA (7) 1.8 0.0018 E18.5 retina GAAAAAAAAA (204) 65.5 0.0655 E18.5 retina AAGAAAATAG (6) 25.5 0.0255 E18.5 retina GCTGACTCCG (3) 10.9 0.0109 E18.5 retina TAAATAAAAA (6) 5.5 0.0055 E18.5 retina GTGAAAACAA (4) 3.6 0.0036 E18.5 retina TGCCGCCATT (2) 3.6 0.0036 E18.5 retina AGGAAAATAG 1.8 0.0018 E18.5 retina GGGAAAAAAA (36) 1.8 0.0018 E18.5 retina GTGGATGTCA (4) 1.8 0.0018 P0.5 retina GAAAAAAAAA (204) 35.3 0.0353 P0.5 retina AAGAAAATAG (6) 33.4 0.0334 P0.5 retina AAAAAAAAGA (7) 3.9 0.0039 P0.5 retina AGTGACAGGG (2) 3.9 0.0039 P0.5 retina GGGAAAAAAA (36) 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina TGCCGCCATT (2) 3.9 0.0039 P0.5 retina AAGAAAATAC (4) 2 0.002 P0.5 retina AGGAAAATAG 2 0.002 P0.5 retina GCTGACTCCG (3) 2 0.002 P2.5 retina GAAAAAAAAA (204) 86.2 0.0862 P2.5 retina AAGAAAATAG (6) 29.9 0.0299 P2.5 retina TAAATAAAAA (6) 8.8 0.0088 P2.5 retina GGGAAAAAAA (36) 7 0.007 P2.5 retina GCTGACTCCG (3) 5.3 0.0053 P2.5 retina AAAAAAAAGA (7) 3.5 0.0035 P2.5 retina GTGAAAACAA (4) 3.5 0.0035 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina TGTGGAAACA (7) 1.8 0.0018 P4.5 retina GAAAAAAAAA (204) 51.5 0.0515 P4.5 retina AAGAAAATAG (6) 25.8 0.0258 P4.5 retina GGGAAAAAAA (36) 9.9 0.0099 P4.5 retina GTGAAAACAA (4) 7.9 0.0079 P4.5 retina TGCCGCCATT (2) 5.9 0.0059 P4.5 retina TAAATAAAAA (6) 4 0.004 P4.5 retina GTCATAGCTG (590) 2 0.002 P4.5 retina GTGGATGTCA (4) 2 0.002 P6.5 retina GAAAAAAAAA (204) 40 0.04 P6.5 retina GGGAAAAAAA (36) 20 0.02 P6.5 retina AAGAAAATAG (6) 8.3 0.0083 P6.5 retina GTGAAAACAA (4) 6.7 0.0067 P6.5 retina GCTGACTCCG (3) 5 0.005 P6.5 retina TAAATAAAAA (6) 5 0.005 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina TGCCGCCATT (2) 3.3 0.0033 P6.5 retina AAAAAAAAGA (7) 1.7 0.0017 P10.5 crx- retina AAGAAAATAG (6) 137.5 0.1375 P10.5 crx- retina GAAAAAAAAA (204) 16.7 0.0167 P10.5 crx- retina GGGAAAAAAA (36) 11.1 0.0111 P10.5 crx- retina GCTGACTCCG (3) 7.4 0.0074 P10.5 crx- retina AGTGACAGGG (2) 5.6 0.0056 P10.5 crx- retina TGCCGCCATT (2) 3.7 0.0037 P10.5 crx- retina AAAAAAAAGA (7) 1.9 0.0019 P10.5 crx- retina GTAAGAAAAA (5) 1.9 0.0019 P10.5 crx- retina TAAATAAAAA (6) 1.9 0.0019 P10.5 crx+ retina GAAAAAAAAA (204) 42.3 0.0423 P10.5 crx+ retina GGGAAAAAAA (36) 23.1 0.0231 P10.5 crx+ retina AAGAAAATAG (6) 21.1 0.0211 P10.5 crx+ retina GCTGACTCCG (3) 5.8 0.0058 P10.5 crx+ retina TGCCGCCATT (2) 5.8 0.0058 P10.5 crx+ retina GTGAAAACAA (4) 3.8 0.0038 P10.5 crx+ retina AAAAAAAAGA (7) 1.9 0.0019 P10.5 crx+ retina TAAATAAAAA (6) 1.9 0.0019 Adult retinal GGGAAAAAAA (36) 35.2 0.0352 Adult retinal GAAAAAAAAA (204) 16.7 0.0167 Adult retinal TGCCGCCATT (2) 5.6 0.0056 Adult retinal AAGAAAATAG (6) 1.9 0.0019 Adult retinal GCTGACTCCG (3) 1.9 0.0019 Adult retinal GGCTGGTTCC 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal TAAATAAAAA (6) 1.9 0.0019 ONL GGGAAAAAAA (36) 30.6 0.0306 ONL GAAAAAAAAA (204) 24.9 0.0249 ONL AAGAAAATAG (6) 13.4 0.0134 ONL GTCATAGCTG (590) 5.7 0.0057 ONL TGCCGCCATT (2) 3.8 0.0038 ONL AAGAAAATAC (4) 1.9 0.0019 ONL TAAATAAAAA (6) 1.9 0.0019