Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.227642	Rapgef5	Rap guanine nucleotide exchange factor (GEF) 5	12		217944
Gene Ontology	guanyl-nucleotide exchange factor activity | intracellular signaling cascade | nucleus | small GTPase mediated signal transduction
Human Homolog	RAPGEF5[Rap guanine nucleotide exchange factor (GEF) 5]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 56 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGATGAGCT (4) 3.3 0.0033 P8 Cb GC CAGCTGAAAA (4) 3.3 0.0033 P8 Cb GC ACTCTGCTGT 1.6 0.0016 Cb medulloblastoma AAATAAAGCC (3) 13.9 0.0139 Cb medulloblastoma CAGCTGAAAA (4) 2.3 0.0023 Cb medulloblastoma GGAAAGGCTG (6) 2.3 0.0023 Cb medulloblastoma TAAATATTAA 2.3 0.0023 P8 GC+1d culture CAGCTGAAAA (4) 1.1 0.0011 P8 GC+SHH+1d culture TAAATATTAA 2.3 0.0023 P8 GC+SHH+1d culture AAGATGAGCT (4) 1.2 0.0012 P8 GC+SHH+1d culture CAGCTGAAAA (4) 1.2 0.0012 P1 cortex AGGGAGGGTG (5) 13.6 0.0136 P1 cortex AAATAAAGCC (3) 4.5 0.0045 P1 cortex ACTCTGCTGT 4.5 0.0045 P1 cortex TCCTTGAAAT (2) 4.5 0.0045 Hypothalamus ACTCTGCTGT 5.4 0.0054 Hypothalamus AAATAAAGCC (3) 1.8 0.0018 Hypothalamus GGAAAGGCTG (6) 1.8 0.0018 Hypothalamus TCCTTGAAAT (2) 1.8 0.0018 E12.5 retina ATTGCAGACA 1.9 0.0019 E12.5 retina GTTGCCTTCC (2) 1.9 0.0019 E12.5 retina TAAATATTAA 1.9 0.0019 E12.5 retina TCTACTGTGT (2) 1.9 0.0019 E14.5 retina AAGATGAGCT (4) 1.8 0.0018 E14.5 retina ATTGCAGACA 1.8 0.0018 E18.5 retina TAAATATTAA 3.6 0.0036 E18.5 retina TCTACTGTGT (2) 1.8 0.0018 P0.5 retina TCCTTGAAAT (2) 2 0.002 P0.5 retina TCTACTGTGT (2) 2 0.002 P2.5 retina TAAATATTAA 3.5 0.0035 P2.5 retina AAATAAAGCC (3) 1.8 0.0018 P2.5 retina GGAAAGGCTG (6) 1.8 0.0018 P2.5 retina GGAACTTTGG (6) 1.8 0.0018 P2.5 retina GTTGCCTTCC (2) 1.8 0.0018 P4.5 retina AGGGAGGGTG (5) 2 0.002 P4.5 retina GGAAAGGCTG (6) 2 0.002 P4.5 retina TAAATATTAA 2 0.002 P6.5 retina ACTCTGCTGT 3.3 0.0033 P6.5 retina AAATAAAGCC (3) 1.7 0.0017 P6.5 retina ATTGCAGACA 1.7 0.0017 P6.5 retina CAGCTGAAAA (4) 1.7 0.0017 P6.5 retina GGAAAGGCTG (6) 1.7 0.0017 P10.5 crx- retina ACTCTGCTGT 3.7 0.0037 P10.5 crx- retina AAATAAAGCC (3) 1.9 0.0019 P10.5 crx- retina ATTGCAGACA 1.9 0.0019 P10.5 crx- retina TAAATATTAA 1.9 0.0019 P10.5 crx- retina TCCTTGAAAT (2) 1.9 0.0019 P10.5 crx+ retina ACTCTGCTGT 11.5 0.0115 P10.5 crx+ retina CAGCTGAAAA (4) 1.9 0.0019 P10.5 crx+ retina GGAAAGGCTG (6) 1.9 0.0019 P10.5 crx+ retina TAAATATTAA 1.9 0.0019 Adult retinal ACTCTGCTGT 3.7 0.0037 Adult retinal GTTGCCTTCC (2) 1.9 0.0019 ONL AAATAAAGCC (3) 5.7 0.0057 ONL GGAACTTTGG (6) 5.7 0.0057 ONL ACTCTGCTGT 3.8 0.0038