Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.22768	Cldn5	claudin 5	16	16 11.65 cM	12741
Gene Ontology	extracellular space | integral to membrane | membrane | structural molecule activity | tight junction
Human Homolog	CLDN5[claudin 5 (transmembrane protein deleted in velocardiofacial syndrome)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 51 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC TTCGGGTTGC (2) 8.2 0.0082 P8 Cb GC CTGGGTTCGG (3) 6.5 0.0065 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma TTCGGGTTGC (2) 4.6 0.0046 Cb medulloblastoma CTGGGTTCGG (3) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture TTCGGGTTGC (2) 45.7 0.0457 P8 GC+1d culture CTGGGTTCGG (3) 2.3 0.0023 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture TTCGGGTTGC (2) 19.9 0.0199 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts TTCGGGTTGC (2) 10.5 0.0105 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex CTGGGTTCGG (3) 9.9 0.0099 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex TTCGGGTTGC (2) 22.7 0.0227 P1 cortex CTGGGTTCGG (3) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus TTCGGGTTGC (2) 23.5 0.0235 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina TTCGGGTTGC (2) 9.4 0.0094 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina TTCGGGTTGC (2) 12.8 0.0128 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina TTCGGGTTGC (2) 12.7 0.0127 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina TTCGGGTTGC (2) 3.6 0.0036 E18.5 retina GCAGGGACTT (3) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina TTCGGGTTGC (2) 17.7 0.0177 P0.5 retina CTGGGTTCGG (3) 2 0.002 P0.5 retina GCAGGGACTT (3) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina TTCGGGTTGC (2) 17.6 0.0176 P2.5 retina GCAGGGACTT (3) 3.5 0.0035 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina TTCGGGTTGC (2) 9.9 0.0099 P4.5 retina GCAGGGACTT (3) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina TTCGGGTTGC (2) 28.3 0.0283 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina TTCGGGTTGC (2) 26 0.026 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina TTCGGGTTGC (2) 9.6 0.0096 P10.5 crx+ retina CTGGGTTCGG (3) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal TTCGGGTTGC (2) 14.8 0.0148 Adult retinal CTGGGTTCGG (3) 3.7 0.0037 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL TTCGGGTTGC (2) 3.8 0.0038