Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.227918	2400003L07Rik	RIKEN cDNA 2400003L07 gene	16		69707
Mm.227918	Lrch3	leucine-rich repeats and calponin homology (CH) domain containing 3	16		70144
Human Homolog	LRCH3[leucine-rich repeats and calponin homology (CH) domain containing 3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 59 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC AAAAGATACT (3) 11.4 0.0114 P8 Cb GC CGAGCTGGGA (3) 3.3 0.0033 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma AAAAGATACT (3) 4.6 0.0046 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture AAAAGATACT (3) 4.6 0.0046 P8 GC+1d culture CCAGAGCCAG (7) 1.1 0.0011 P8 GC+1d culture TGGGCTAGTT (2) 1.1 0.0011 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture AAAAGATACT (3) 4.7 0.0047 P8 GC+SHH+1d culture CCAGAGCCAG (7) 1.2 0.0012 P8 GC+SHH+1d culture TAATTAATAA (3) 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts CCAGAGCCAG (7) 14 0.014 E15 cortex CCTTTAATCC (355) 54.4 0.0544 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex TGGGCTAGTT (2) 4.5 0.0045 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus AAAAGATACT (3) 1.8 0.0018 Hypothalamus CCAGAGCCAG (7) 1.8 0.0018 Hypothalamus CTACTGGATT (4) 1.8 0.0018 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina TAATTAATAA (3) 1.9 0.0019 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina CCAGAGCCAG (7) 12.8 0.0128 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina CCAGAGCCAG (7) 10.9 0.0109 E16.5 retina AAAAGATACT (3) 3.6 0.0036 E16.5 retina CTACTGGATT (4) 1.8 0.0018 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina AAAAGATACT (3) 3.6 0.0036 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina AAAAGATACT (3) 3.9 0.0039 P0.5 retina CCAGAGCCAG (7) 2 0.002 P0.5 retina CTACTGGATT (4) 2 0.002 P0.5 retina TGGGCTAGTT (2) 2 0.002 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina AAAAGATACT (3) 7 0.007 P2.5 retina CCAGAGCCAG (7) 1.8 0.0018 P2.5 retina TAATTAATAA (3) 1.8 0.0018 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina AAAAGATACT (3) 7.9 0.0079 P4.5 retina TAATTAATAA (3) 4 0.004 P4.5 retina CTACTGGATT (4) 2 0.002 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina AAAAGATACT (3) 5 0.005 P6.5 retina CGAGCTGGGA (3) 1.7 0.0017 P6.5 retina TAATTAATAA (3) 1.7 0.0017 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina AAAAGATACT (3) 42.7 0.0427 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina CGAGCTGGGA (3) 9.6 0.0096 P10.5 crx+ retina AAAAGATACT (3) 3.8 0.0038 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal CGAGCTGGGA (3) 5.6 0.0056 ONL CCTTTAATCC (355) 84.3 0.0843 ONL AAAAGATACT (3) 5.7 0.0057 ONL CGAGCTGGGA (3) 3.8 0.0038