Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.22948
E130107B13Rik
RIKEN cDNA E130107B13 gene
19
320006
Mm.22948
Ubtd1
ubiquitin domain containing 1
19
226122
Human Homolog
UBTD1[ubiquitin domain containing 1]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 40 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
AAGCCTGGCT (
5
)
6.5
0.0065
P8 Cb GC
GCAGGGGTTT
(
3
)
1.6
0.0016
Cb medulloblastoma
GGGGGGGGGG (
112
)
6.9
0.0069
Cb medulloblastoma
GCAGGGGTTG (
4
)
4.6
0.0046
Cb medulloblastoma
GCAGGGGTTT
(
3
)
2.3
0.0023
P8 GC+1d culture
GGGGGGGGGG (
112
)
2.3
0.0023
P8 GC+1d culture
AAGCCTGGCT (
5
)
1.1
0.0011
P8 GC+1d culture
GCAGGGGTTG (
4
)
1.1
0.0011
P8 GC+SHH+1d culture
GGGGGGGGGG (
112
)
7
0.007
P8 GC+SHH+1d culture
AAGCCTGGCT (
5
)
1.2
0.0012
3T3 fibroblasts
AAGCCTGGCT (
5
)
3.5
0.0035
3T3 fibroblasts
GCAGGGGTTT
(
3
)
3.5
0.0035
3T3 fibroblasts
GGGGGGGGGG (
112
)
3.5
0.0035
E15 cortex
GGGGGGGGGG (
112
)
4.9
0.0049
Hypothalamus
GCAGGGGTTG (
4
)
3.6
0.0036
Hypothalamus
GGGGGCCCTG (
11
)
1.8
0.0018
Hypothalamus
GGGGGGGGGG (
112
)
1.8
0.0018
E12.5 retina
GCAGGGGTTT
(
3
)
3.8
0.0038
E16.5 retina
AAGCCTGGCT (
5
)
1.8
0.0018
E18.5 retina
AAGCCTGGCT (
5
)
3.6
0.0036
E18.5 retina
GCAGGGGTTG (
4
)
1.8
0.0018
E18.5 retina
GCAGGGGTTT
(
3
)
1.8
0.0018
P2.5 retina
GGGGGGGGGG (
112
)
7
0.007
P4.5 retina
GGGGGGGGGG (
112
)
9.9
0.0099
P4.5 retina
GCAGGGGTTT
(
3
)
2
0.002
P6.5 retina
GCAGGGGTTT
(
3
)
3.3
0.0033
P6.5 retina
GGGGGGGGGG (
112
)
3.3
0.0033
P10.5 crx- retina
GCAGGGGTTT
(
3
)
11.1
0.0111
P10.5 crx- retina
GGGGGCCCTG (
11
)
3.7
0.0037
P10.5 crx- retina
GCAGGGGTTG (
4
)
1.9
0.0019
P10.5 crx+ retina
GCAGGGGTTT
(
3
)
11.5
0.0115
P10.5 crx+ retina
GGGGGGGGGG (
112
)
9.6
0.0096
P10.5 crx+ retina
AAGCCTGGCT (
5
)
1.9
0.0019
Adult retinal
GCAGGGGTTT
(
3
)
3.7
0.0037
Adult retinal
GGGGGGGGGG (
112
)
3.7
0.0037
Adult retinal
GGGGGCCCTG (
11
)
1.9
0.0019
ONL
GCAGGGGTTT
(
3
)
7.7
0.0077
ONL
GCAGGGGTTG (
4
)
5.7
0.0057
ONL
ACTTCATCAG
(
3
)
1.9
0.0019
ONL
GGGGGGGGGG (
112
)
1.9
0.0019
