Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.233009	Rap1b	RAS related protein 1b	10		215449
Gene Ontology	GTP binding | small GTPase mediated signal transduction
Human Homolog	RAP1B[RAP1B, member of RAS oncogene family]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 84 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAAAAAAAAA (157) 47.3 0.0473 P8 Cb GC TATGAAAATG (6) 21.2 0.0212 P8 Cb GC TGTAACTGGT (3) 4.9 0.0049 P8 Cb GC AGCAAGCAAG 1.6 0.0016 P8 Cb GC CATATGTGTG (2) 1.6 0.0016 P8 Cb GC CTACTTTTCT 1.6 0.0016 Cb medulloblastoma CAAAAAAAAA (157) 92.5 0.0925 Cb medulloblastoma TATGAAAATG (6) 18.5 0.0185 P8 GC+1d culture CAAAAAAAAA (157) 37.7 0.0377 P8 GC+1d culture TATGAAAATG (6) 29.7 0.0297 P8 GC+1d culture TGTAACTGGT (3) 4.6 0.0046 P8 GC+1d culture AGCAAGCAAG 2.3 0.0023 P8 GC+1d culture CTACTTTTCT 1.1 0.0011 P8 GC+SHH+1d culture CAAAAAAAAA (157) 58.5 0.0585 P8 GC+SHH+1d culture TATGAAAATG (6) 18.7 0.0187 P8 GC+SHH+1d culture AGCAAGCAAG 2.3 0.0023 P8 GC+SHH+1d culture TGTAACTGGT (3) 2.3 0.0023 P8 GC+SHH+1d culture CTACTTTTCT 1.2 0.0012 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts TGTAACTGGT (3) 7 0.007 3T3 fibroblasts AGCAAGCAAG 3.5 0.0035 3T3 fibroblasts TATGAAAATG (6) 3.5 0.0035 E15 cortex CAAAAAAAAA (157) 34.6 0.0346 E15 cortex TGTAACTGGT (3) 14.8 0.0148 E15 cortex GTCATAGCTG (590) 4.9 0.0049 E15 cortex TATGAAAATG (6) 4.9 0.0049 P1 cortex CAAAAAAAAA (157) 22.7 0.0227 P1 cortex TATGAAAATG (6) 4.5 0.0045 P1 cortex TGTAACTGGT (3) 4.5 0.0045 Hypothalamus CAAAAAAAAA (157) 39.8 0.0398 Hypothalamus TATGAAAATG (6) 23.5 0.0235 E12.5 retina CAAAAAAAAA (157) 22.5 0.0225 E12.5 retina TATGAAAATG (6) 7.5 0.0075 E12.5 retina TGTAACTGGT (3) 7.5 0.0075 E12.5 retina AGCAAGCAAG 3.8 0.0038 E14.5 retina TATGAAAATG (6) 21.9 0.0219 E14.5 retina CAAAAAAAAA (157) 9.1 0.0091 E14.5 retina TAATGAGATT (2) 5.5 0.0055 E14.5 retina AGCAAGCAAG 1.8 0.0018 E16.5 retina TATGAAAATG (6) 38 0.038 E16.5 retina CAAAAAAAAA (157) 9.1 0.0091 E16.5 retina TAATGAGATT (2) 7.2 0.0072 E16.5 retina CATATGTGTG (2) 1.8 0.0018 E18.5 retina CAAAAAAAAA (157) 41.8 0.0418 E18.5 retina TATGAAAATG (6) 29.1 0.0291 E18.5 retina TAATGAGATT (2) 3.6 0.0036 E18.5 retina CTACTTTTCT 1.8 0.0018 E18.5 retina TGTAACTGGT (3) 1.8 0.0018 P0.5 retina CAAAAAAAAA (157) 137.4 0.1374 P0.5 retina TAATGAGATT (2) 9.8 0.0098 P0.5 retina TATGAAAATG (6) 7.9 0.0079 P0.5 retina AGCAAGCAAG 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina TGTAACTGGT (3) 3.9 0.0039 P2.5 retina CAAAAAAAAA (157) 52.8 0.0528 P2.5 retina TATGAAAATG (6) 21.1 0.0211 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina TAATGAGATT (2) 1.8 0.0018 P2.5 retina TGTAACTGGT (3) 1.8 0.0018 P4.5 retina CAAAAAAAAA (157) 41.6 0.0416 P4.5 retina TATGAAAATG (6) 11.9 0.0119 P4.5 retina GTCATAGCTG (590) 2 0.002 P4.5 retina TGTAACTGGT (3) 2 0.002 P6.5 retina CAAAAAAAAA (157) 31.7 0.0317 P6.5 retina TATGAAAATG (6) 18.3 0.0183 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P10.5 crx- retina TATGAAAATG (6) 40.9 0.0409 P10.5 crx- retina CAAAAAAAAA (157) 13 0.013 P10.5 crx- retina TGTAACTGGT (3) 3.7 0.0037 P10.5 crx- retina CATATGTGTG (2) 1.9 0.0019 P10.5 crx- retina CTACTTTTCT 1.9 0.0019 P10.5 crx+ retina CAAAAAAAAA (157) 32.7 0.0327 P10.5 crx+ retina TATGAAAATG (6) 19.2 0.0192 P10.5 crx+ retina AGCAAGCAAG 9.6 0.0096 P10.5 crx+ retina CATATGTGTG (2) 3.8 0.0038 P10.5 crx+ retina TGTAACTGGT (3) 1.9 0.0019 Adult retinal CAAAAAAAAA (157) 20.4 0.0204 Adult retinal TATGAAAATG (6) 9.3 0.0093 Adult retinal CATATGTGTG (2) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 ONL TATGAAAATG (6) 19.2 0.0192 ONL CAAAAAAAAA (157) 17.2 0.0172 ONL GTCATAGCTG (590) 5.7 0.0057 ONL AGCAAGCAAG 3.8 0.0038