Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.234437
1700056O17Rik
RIKEN cDNA 1700056O17 gene
10
67345
Mm.234437
D230019N24Rik
RIKEN cDNA D230019N24 gene
10
399607
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 106 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TGGTTGCTGG (
369
)
68.5
0.0685
P8 Cb GC
TAAAAAAAAA (
196
)
47.3
0.0473
P8 Cb GC
GAAAAAAAAA (
204
)
45.7
0.0457
P8 Cb GC
TGGGTGCTGG (
64
)
8.2
0.0082
P8 Cb GC
AAGTCCAAGA (
6
)
1.6
0.0016
P8 Cb GC
AATTGTCCAT
(
2
)
1.6
0.0016
P8 Cb GC
TAATAAATTG
(
3
)
1.6
0.0016
Cb medulloblastoma
GAAAAAAAAA (
204
)
173.4
0.1734
Cb medulloblastoma
TGGTTGCTGG (
369
)
113.3
0.1133
Cb medulloblastoma
TAAAAAAAAA (
196
)
106.4
0.1064
Cb medulloblastoma
TGGGTGCTGG (
64
)
9.2
0.0092
Cb medulloblastoma
AATTGTCCAT
(
2
)
2.3
0.0023
P8 GC+1d culture
TAAAAAAAAA (
196
)
66.2
0.0662
P8 GC+1d culture
TGGTTGCTGG (
369
)
57.1
0.0571
P8 GC+1d culture
GAAAAAAAAA (
204
)
41.1
0.0411
P8 GC+1d culture
TGGGTGCTGG (
64
)
5.7
0.0057
P8 GC+1d culture
GAAATGTTGC
(
2
)
3.4
0.0034
P8 GC+SHH+1d culture
TAAAAAAAAA (
196
)
93.7
0.0937
P8 GC+SHH+1d culture
TGGTTGCTGG (
369
)
89
0.089
P8 GC+SHH+1d culture
GAAAAAAAAA (
204
)
77.3
0.0773
P8 GC+SHH+1d culture
TGGGTGCTGG (
64
)
3.5
0.0035
P8 GC+SHH+1d culture
AATTGTCCAT
(
2
)
2.3
0.0023
3T3 fibroblasts
TGGTTGCTGG (
369
)
220.8
0.2208
3T3 fibroblasts
TGGGTGCTGG (
64
)
17.5
0.0175
3T3 fibroblasts
TAAAAAAAAA (
196
)
7
0.007
E15 cortex
TGGTTGCTGG (
369
)
277.1
0.2771
E15 cortex
GAAAAAAAAA (
204
)
54.4
0.0544
E15 cortex
TGGGTGCTGG (
64
)
14.8
0.0148
E15 cortex
TAAAAAAAAA (
196
)
9.9
0.0099
P1 cortex
TGGTTGCTGG (
369
)
86.4
0.0864
P1 cortex
TAAAAAAAAA (
196
)
50
0.05
P1 cortex
GAAAAAAAAA (
204
)
45.5
0.0455
P1 cortex
TGGGTGCTGG (
64
)
13.6
0.0136
Hypothalamus
TGGTTGCTGG (
369
)
349.6
0.3496
Hypothalamus
GAAAAAAAAA (
204
)
67
0.067
Hypothalamus
TAAAAAAAAA (
196
)
32.6
0.0326
Hypothalamus
TGGGTGCTGG (
64
)
9.1
0.0091
E12.5 retina
TGGTTGCTGG (
369
)
157.7
0.1577
E12.5 retina
GAAAAAAAAA (
204
)
46.9
0.0469
E12.5 retina
TAAAAAAAAA (
196
)
24.4
0.0244
E12.5 retina
GAAATGTTGC
(
2
)
9.4
0.0094
E12.5 retina
TGGGTGCTGG (
64
)
9.4
0.0094
E12.5 retina
AATTGTCCAT
(
2
)
1.9
0.0019
E14.5 retina
TGGTTGCTGG (
369
)
936.5
0.9365
E14.5 retina
TGGGTGCTGG (
64
)
54.7
0.0547
E14.5 retina
TAAAAAAAAA (
196
)
41.9
0.0419
E14.5 retina
GAAAAAAAAA (
204
)
34.6
0.0346
E14.5 retina
AAGTCCAAGA (
6
)
1.8
0.0018
E14.5 retina
AATTGTCCAT
(
2
)
1.8
0.0018
E14.5 retina
CACACAGAAA (
3
)
1.8
0.0018
E14.5 retina
GAAAAGGAGA (
7
)
1.8
0.0018
E14.5 retina
GAAATGTTGC
(
2
)
1.8
0.0018
E16.5 retina
TGGTTGCTGG (
369
)
767.9
0.7679
E16.5 retina
TGGGTGCTGG (
64
)
41.7
0.0417
E16.5 retina
GAAAAAAAAA (
204
)
23.5
0.0235
E16.5 retina
TAAAAAAAAA (
196
)
23.5
0.0235
E18.5 retina
TGGTTGCTGG (
369
)
252.8
0.2528
E18.5 retina
TAAAAAAAAA (
196
)
107.3
0.1073
E18.5 retina
GAAAAAAAAA (
204
)
65.5
0.0655
E18.5 retina
TGGGTGCTGG (
64
)
20
0.02
E18.5 retina
GAAATGTTGC
(
2
)
3.6
0.0036
E18.5 retina
TAATAAATTG
(
3
)
1.8
0.0018
P0.5 retina
TGGTTGCTGG (
369
)
190.4
0.1904
P0.5 retina
TAAAAAAAAA (
196
)
37.3
0.0373
P0.5 retina
GAAAAAAAAA (
204
)
35.3
0.0353
P0.5 retina
TGGGTGCTGG (
64
)
11.8
0.0118
P2.5 retina
TGGTTGCTGG (
369
)
165.4
0.1654
P2.5 retina
GAAAAAAAAA (
204
)
86.2
0.0862
P2.5 retina
TAAAAAAAAA (
196
)
72.2
0.0722
P2.5 retina
TGGGTGCTGG (
64
)
17.6
0.0176
P2.5 retina
AATTGTCCAT
(
2
)
3.5
0.0035
P2.5 retina
GAAATGTTGC
(
2
)
3.5
0.0035
P4.5 retina
TGGTTGCTGG (
369
)
150.6
0.1506
P4.5 retina
TAAAAAAAAA (
196
)
122.8
0.1228
P4.5 retina
GAAAAAAAAA (
204
)
51.5
0.0515
P4.5 retina
TGGGTGCTGG (
64
)
9.9
0.0099
P4.5 retina
AATTGTCCAT
(
2
)
2
0.002
P4.5 retina
CACACAGAAA (
3
)
2
0.002
P6.5 retina
TGGTTGCTGG (
369
)
156.7
0.1567
P6.5 retina
TAAAAAAAAA (
196
)
63.4
0.0634
P6.5 retina
GAAAAAAAAA (
204
)
40
0.04
P6.5 retina
TGGGTGCTGG (
64
)
13.3
0.0133
P10.5 crx- retina
TGGTTGCTGG (
369
)
280.5
0.2805
P10.5 crx- retina
TGGGTGCTGG (
64
)
20.4
0.0204
P10.5 crx- retina
GAAAAAAAAA (
204
)
16.7
0.0167
P10.5 crx- retina
TAAAAAAAAA (
196
)
9.3
0.0093
P10.5 crx- retina
GAAATGTTGC
(
2
)
1.9
0.0019
P10.5 crx+ retina
TGGTTGCTGG (
369
)
101.9
0.1019
P10.5 crx+ retina
GAAAAAAAAA (
204
)
42.3
0.0423
P10.5 crx+ retina
TAAAAAAAAA (
196
)
25
0.025
P10.5 crx+ retina
TGGGTGCTGG (
64
)
15.4
0.0154
P10.5 crx+ retina
AATTGTCCAT
(
2
)
1.9
0.0019
P10.5 crx+ retina
GAAATGTTGC
(
2
)
1.9
0.0019
Adult retinal
TGGTTGCTGG (
369
)
214.8
0.2148
Adult retinal
TAAAAAAAAA (
196
)
18.5
0.0185
Adult retinal
GAAAAAAAAA (
204
)
16.7
0.0167
Adult retinal
TGGGTGCTGG (
64
)
13
0.013
Adult retinal
GAAATGTTGC
(
2
)
1.9
0.0019
ONL
TGGTTGCTGG (
369
)
398.4
0.3984
ONL
TGGGTGCTGG (
64
)
40.2
0.0402
ONL
TAAAAAAAAA (
196
)
28.7
0.0287
ONL
GAAAAAAAAA (
204
)
24.9
0.0249
ONL
GAAATGTTGC
(
2
)
5.7
0.0057
ONL
AAGTCCAAGA (
6
)
1.9
0.0019
ONL
CACACAGAAA (
3
)
1.9
0.0019
ONL
TAATAAATTG
(
3
)
1.9
0.0019
