Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.234912	Plec1	plectin 1	15	15 D3 (15 44.0 cM)	18810
Gene Ontology	actin binding | cytoskeleton | insoluble fraction | muscle fiber | structural molecule activity
Human Homolog	PLEC1[plectin 1, intermediate filament binding protein 500kDa] | PLEC1[plectin 1, intermediate filament binding protein 500kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 66 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ACCTTTTCTT (9) 8.2 0.0082 P8 Cb GC GGAAAGAAAA (7) 1.6 0.0016 P8 Cb GC GGCGGGGCCC (2) 1.6 0.0016 P8 Cb GC TTCCGCAAGT 1.6 0.0016 Cb medulloblastoma ACCTTTTCTT (9) 6.9 0.0069 Cb medulloblastoma GGAAAGAAAA (7) 4.6 0.0046 Cb medulloblastoma GGCGGGGCCC (2) 4.6 0.0046 P8 GC+1d culture ACCTTTTCTT (9) 14.8 0.0148 P8 GC+1d culture GGCGGGGCCC (2) 6.8 0.0068 P8 GC+1d culture CAGGAGGAGG (10) 1.1 0.0011 P8 GC+1d culture GGAAAGAAAA (7) 1.1 0.0011 P8 GC+SHH+1d culture ACCTTTTCTT (9) 14.1 0.0141 P8 GC+SHH+1d culture GGCGGGGCCC (2) 5.9 0.0059 P8 GC+SHH+1d culture TTCCGCAAGT 2.3 0.0023 P8 GC+SHH+1d culture GGTGCTGCTG (2) 1.2 0.0012 3T3 fibroblasts GGCGGGGCCC (2) 28 0.028 E15 cortex GGAAAGAAAA (7) 4.9 0.0049 P1 cortex ACCTTTTCTT (9) 13.6 0.0136 P1 cortex GGCGGGGCCC (2) 4.5 0.0045 Hypothalamus ACCTTTTCTT (9) 5.4 0.0054 Hypothalamus GGCGGGGCCC (2) 5.4 0.0054 Hypothalamus GAGGGGCCAG (4) 3.6 0.0036 Hypothalamus AACACTTCAA (9) 1.8 0.0018 E12.5 retina ACCTTTTCTT (9) 7.5 0.0075 E12.5 retina AAGCGCTCCC (3) 1.9 0.0019 E12.5 retina CAGGAGGAGG (10) 1.9 0.0019 E14.5 retina ACCTTTTCTT (9) 21.9 0.0219 E14.5 retina GAGGGGCCAG (4) 1.8 0.0018 E16.5 retina ACCTTTTCTT (9) 14.5 0.0145 E16.5 retina AACACTTCAA (9) 1.8 0.0018 E16.5 retina AAGCGCTCCC (3) 1.8 0.0018 E16.5 retina GGCGGGGCCC (2) 1.8 0.0018 E16.5 retina GGTGCTGCTG (2) 1.8 0.0018 E18.5 retina ACCTTTTCTT (9) 7.3 0.0073 E18.5 retina GGAAAGAAAA (7) 3.6 0.0036 E18.5 retina GGCGGGGCCC (2) 3.6 0.0036 P0.5 retina ACCTTTTCTT (9) 11.8 0.0118 P0.5 retina GGCGGGGCCC (2) 5.9 0.0059 P0.5 retina GGTGCTGCTG (2) 5.9 0.0059 P0.5 retina GGAAAGAAAA (7) 2 0.002 P2.5 retina GGCGGGGCCC (2) 10.6 0.0106 P2.5 retina ACCTTTTCTT (9) 8.8 0.0088 P2.5 retina AACACTTCAA (9) 1.8 0.0018 P2.5 retina GAGGGGCCAG (4) 1.8 0.0018 P2.5 retina GGAAAGAAAA (7) 1.8 0.0018 P2.5 retina GGTGCTGCTG (2) 1.8 0.0018 P4.5 retina ACCTTTTCTT (9) 19.8 0.0198 P4.5 retina GGCGGGGCCC (2) 7.9 0.0079 P4.5 retina AACACTTCAA (9) 2 0.002 P6.5 retina GGCGGGGCCC (2) 11.7 0.0117 P6.5 retina ACCTTTTCTT (9) 3.3 0.0033 P6.5 retina AACACTTCAA (9) 1.7 0.0017 P6.5 retina AAGCGCTCCC (3) 1.7 0.0017 P6.5 retina CAGGAGGAGG (10) 1.7 0.0017 P10.5 crx- retina ACCTTTTCTT (9) 20.4 0.0204 P10.5 crx- retina GGCGGGGCCC (2) 11.1 0.0111 P10.5 crx- retina AACACTTCAA (9) 1.9 0.0019 P10.5 crx- retina GAGGGGCCAG (4) 1.9 0.0019 P10.5 crx- retina GGAAAGAAAA (7) 1.9 0.0019 P10.5 crx+ retina ACCTTTTCTT (9) 5.8 0.0058 P10.5 crx+ retina GGCGGGGCCC (2) 5.8 0.0058 P10.5 crx+ retina CAGGAGGAGG (10) 1.9 0.0019 Adult retinal ACCTTTTCTT (9) 3.7 0.0037 Adult retinal CAGGAGGAGG (10) 1.9 0.0019 Adult retinal GGCGGGGCCC (2) 1.9 0.0019 ONL GGCGGGGCCC (2) 3.8 0.0038