Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.235300	Lin7c	lin 7 homolog c (C. elegans)	2	2 61.0 cM	22343
Human Homolog	LIN7C[lin-7 homolog C (C. elegans)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 114 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC AAACTTCAGA 4.9 0.0049 P8 Cb GC CCTTTAATTC (36) 1.6 0.0016 P8 Cb GC GAACCTTTTT (2) 1.6 0.0016 P8 Cb GC GGACCTTTTT (5) 1.6 0.0016 P8 Cb GC TCCAGGTTAC 1.6 0.0016 P8 Cb GC TGTTTTTAAA (6) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma AAACTTCAGA 11.6 0.0116 Cb medulloblastoma CCTTTAATTC (36) 4.6 0.0046 Cb medulloblastoma TCAGGAACCA 2.3 0.0023 Cb medulloblastoma TGTTTTTAAA (6) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture GTTTTTAAAA (11) 3.4 0.0034 P8 GC+1d culture AAACTTCAGA 2.3 0.0023 P8 GC+1d culture TGTTTTTAAA (6) 2.3 0.0023 P8 GC+1d culture CTAGCTTCCT (2) 1.1 0.0011 P8 GC+1d culture GACTTTCTGG (4) 1.1 0.0011 P8 GC+1d culture TCCAGGTTAC 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture AAACTTCAGA 10.5 0.0105 P8 GC+SHH+1d culture CCTTTAATTC (36) 7 0.007 P8 GC+SHH+1d culture CTAGCTTCCT (2) 3.5 0.0035 P8 GC+SHH+1d culture GTTTTTAAAA (11) 2.3 0.0023 P8 GC+SHH+1d culture TGTTTTTAAA (6) 2.3 0.0023 P8 GC+SHH+1d culture GAACCTTTTT (2) 1.2 0.0012 P8 GC+SHH+1d culture GACTTTCTGG (4) 1.2 0.0012 P8 GC+SHH+1d culture TCCAGTTACA 1.2 0.0012 P8 GC+SHH+1d culture TGAACAGTGG (3) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts CCTTTAATTC (36) 7 0.007 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex GGACCTTTTT (5) 9.9 0.0099 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex CCTTTAATTC (36) 13.6 0.0136 P1 cortex GAACCTTTTT (2) 9.1 0.0091 P1 cortex GCTTTTAAAA (11) 9.1 0.0091 P1 cortex AAACTTCAGA 4.5 0.0045 P1 cortex GGACCTTTTT (5) 4.5 0.0045 P1 cortex GTTTTTAAAA (11) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus GGACCTTTTT (5) 1.8 0.0018 Hypothalamus GTTTTTAAAA (11) 1.8 0.0018 Hypothalamus TGTTTCTAAA (3) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina AAACTTCAGA 13.1 0.0131 E12.5 retina CCTTTAATTC (36) 3.8 0.0038 E12.5 retina TGAACAGTGG (3) 3.8 0.0038 E12.5 retina GAACCTTTTT (2) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina AAACTTCAGA 7.3 0.0073 E14.5 retina CCTTTAATTC (36) 7.3 0.0073 E14.5 retina TCAGGAACCA 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina AAACTTCAGA 3.6 0.0036 E16.5 retina CCTTTAATTC (36) 3.6 0.0036 E16.5 retina GCTTTTAAAA (11) 3.6 0.0036 E16.5 retina GTTTTTAAAA (11) 1.8 0.0018 E16.5 retina TGTTTCTAAA (3) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina TGTTTCTAAA (3) 5.5 0.0055 E18.5 retina AAACTTCAGA 1.8 0.0018 E18.5 retina CCTTTAATTC (36) 1.8 0.0018 E18.5 retina CTAGCTTCCT (2) 1.8 0.0018 E18.5 retina GCTTTTAAAA (11) 1.8 0.0018 E18.5 retina TCCAGGTTAC 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina AAACTTCAGA 9.8 0.0098 P0.5 retina CCTTTAATTC (36) 5.9 0.0059 P0.5 retina GTTTTTAAAA (11) 3.9 0.0039 P0.5 retina GAACCTTTTT (2) 2 0.002 P0.5 retina TCCAGTTACA 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina AAACTTCAGA 10.6 0.0106 P2.5 retina CCACTGCAAA 1.8 0.0018 P2.5 retina CCTTTAATTC (36) 1.8 0.0018 P2.5 retina CTAGCTTCCT (2) 1.8 0.0018 P2.5 retina GCTTTTAAAA (11) 1.8 0.0018 P2.5 retina TCCAGTTAAA 1.8 0.0018 P2.5 retina TCCAGTTACA 1.8 0.0018 P2.5 retina TGTTTTTAAA (6) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina AAACTTCAGA 7.9 0.0079 P4.5 retina TGTTTTTAAA (6) 5.9 0.0059 P4.5 retina CCTTTAATTC (36) 4 0.004 P4.5 retina GTTTTTAAAA (11) 4 0.004 P4.5 retina TGTTTCTAAA (3) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina CCTTTAATTC (36) 5 0.005 P6.5 retina CTAGCTTCCT (2) 5 0.005 P6.5 retina AAACTTCAGA 3.3 0.0033 P6.5 retina TGTTTTTAAA (6) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina AAACTTCAGA 5.6 0.0056 P10.5 crx- retina CCTTTAATTC (36) 1.9 0.0019 P10.5 crx- retina CTAGCTTCCT (2) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina AAACTTCAGA 3.8 0.0038 P10.5 crx+ retina CTAGCTTCCT (2) 3.8 0.0038 P10.5 crx+ retina GACTTTCTGG (4) 3.8 0.0038 P10.5 crx+ retina CCACTGCAAA 1.9 0.0019 P10.5 crx+ retina GCTTTTAAAA (11) 1.9 0.0019 P10.5 crx+ retina TGTTTTTAAA (6) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal CCTTTAATTC (36) 1.9 0.0019 Adult retinal GACTTTCTGG (4) 1.9 0.0019 Adult retinal TCAGGAACCA 1.9 0.0019 Adult retinal TGAACAGTGG (3) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL AAACTTCAGA 5.7 0.0057 ONL CCTTTAATTC (36) 3.8 0.0038 ONL TCCAGTTAAA 3.8 0.0038 ONL CCACTGCAAA 1.9 0.0019 ONL TGTTTTTAAA (6) 1.9 0.0019