Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.235758	Scn8a	sodium channel, voltage-gated, type VIII, alpha polypeptide	15	15 60.0 cM	20273
Gene Ontology	adult walking behavior | ATP binding | cation channel activity | cation transport | integral to membrane | ion channel activity | ion transport | locomotory behavior | membrane | sodium ion transport | voltage-gated ion channel activity | voltage-gated sodium channel activity | voltage-gated sodium channel complex
Human Homolog	SCN8A[sodium channel, voltage gated, type VIII, alpha]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 34 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGGAGACTCT (4) 9.8 0.0098 P8 Cb GC TTCCACACTC (3) 1.6 0.0016 Cb medulloblastoma GGGAGACTCT (4) 18.5 0.0185 Cb medulloblastoma AAGCCTGTCA (2) 2.3 0.0023 Cb medulloblastoma TGCCACCCAC (4) 2.3 0.0023 P8 GC+1d culture AATCAGGTAA (3) 2.3 0.0023 P8 GC+1d culture GGGAGACTCT (4) 2.3 0.0023 P8 GC+1d culture TCTGTCTGCT (2) 1.1 0.0011 P8 GC+SHH+1d culture AAGCCTGTCA (2) 1.2 0.0012 P8 GC+SHH+1d culture CAAACAATAT (2) 1.2 0.0012 P8 GC+SHH+1d culture GGGAGACTCT (4) 1.2 0.0012 P8 GC+SHH+1d culture TCTGTCTGCT (2) 1.2 0.0012 E15 cortex GGGAGACTCT (4) 9.9 0.0099 Hypothalamus GGGAGACTCT (4) 3.6 0.0036 Hypothalamus TCTGTCTGCT (2) 1.8 0.0018 Hypothalamus TGCCACCCAC (4) 1.8 0.0018 Hypothalamus TTCCACACTC (3) 1.8 0.0018 E14.5 retina GGGAGACTCT (4) 1.8 0.0018 E14.5 retina TTCCACACTC (3) 1.8 0.0018 E18.5 retina AATCAGGTAA (3) 1.8 0.0018 E18.5 retina CAAACAATAT (2) 1.8 0.0018 E18.5 retina GGGAGACTCT (4) 1.8 0.0018 P0.5 retina AATCAGGTAA (3) 2 0.002 P0.5 retina TCTGTCTGCT (2) 2 0.002 P2.5 retina GGGAGACTCT (4) 1.8 0.0018 P6.5 retina AAGCCTGTCA (2) 3.3 0.0033 P6.5 retina GGGAGACTCT (4) 3.3 0.0033 P10.5 crx- retina AAGCCTGTCA (2) 1.9 0.0019 P10.5 crx- retina CAAACAATAT (2) 1.9 0.0019 P10.5 crx+ retina GGGAGACTCT (4) 1.9 0.0019 P10.5 crx+ retina TTCCACACTC (3) 1.9 0.0019 Adult retinal GGGAGACTCT (4) 7.4 0.0074 Adult retinal TGCCACCCAC (4) 1.9 0.0019 ONL AAGCCTGTCA (2) 1.9 0.0019