Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.240336	Sptlc1	serine palmitoyltransferase, long chain base subunit 1	13		268656
Gene Ontology	acyltransferase activity | biosynthesis | endoplasmic reticulum | integral to membrane | metabolism | serine C-palmitoyltransferase activity | transaminase activity | transferase activity
Human Homolog	SPTLC1[serine palmitoyltransferase, long chain base subunit 1] | SPTLC1[serine palmitoyltransferase, long chain base subunit 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 56 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTACAAGCCT (2) 32.6 0.0326 P8 Cb GC CCCTTGGTAT 1.6 0.0016 P8 Cb GC CTGAGGAGGG (7) 1.6 0.0016 Cb medulloblastoma GGGAAGGTGG (6) 2.3 0.0023 Cb medulloblastoma GGTCGGCATC 2.3 0.0023 P8 GC+1d culture TTACAAGCCT (2) 12.6 0.0126 P8 GC+1d culture GGAAAAGTGG (3) 1.1 0.0011 P8 GC+1d culture GGGAAGGTGG (6) 1.1 0.0011 P8 GC+1d culture GGTCGGCATC 1.1 0.0011 P8 GC+1d culture TTAAAAGCCT (4) 1.1 0.0011 P8 GC+SHH+1d culture GGAAAAGTGG (3) 53.9 0.0539 P8 GC+SHH+1d culture TTACAAGCCT (2) 15.2 0.0152 P8 GC+SHH+1d culture TGAACCGTGG (2) 2.3 0.0023 P8 GC+SHH+1d culture GGGAAGGTGG (6) 1.2 0.0012 P8 GC+SHH+1d culture TGGGTGTTGA (8) 1.2 0.0012 3T3 fibroblasts TTACAAGCCT (2) 14 0.014 3T3 fibroblasts TGAACCGTGG (2) 7 0.007 3T3 fibroblasts GGGAAGGTGG (6) 3.5 0.0035 P1 cortex GGTCGGCATC 4.5 0.0045 P1 cortex TTAAAAGCCT (4) 4.5 0.0045 Hypothalamus GGTCGGCATC 3.6 0.0036 Hypothalamus GGGAAGGTGG (6) 1.8 0.0018 Hypothalamus TTAAAAGCCT (4) 1.8 0.0018 Hypothalamus TTACAAGCCT (2) 1.8 0.0018 E12.5 retina TTACAAGCCT (2) 26.3 0.0263 E12.5 retina CCCTTGGTAT 1.9 0.0019 E14.5 retina TTACAAGCCT (2) 38.3 0.0383 E14.5 retina CCCTTGGTAT 1.8 0.0018 E16.5 retina TTACAAGCCT (2) 19.9 0.0199 E16.5 retina CTGAGGAGGG (7) 1.8 0.0018 E16.5 retina GGGAAGGTGG (6) 1.8 0.0018 E16.5 retina TGGGTGTTGA (8) 1.8 0.0018 E16.5 retina TTAAAAGCCT (4) 1.8 0.0018 E18.5 retina TTACAAGCCT (2) 43.7 0.0437 E18.5 retina CTGAGGAGGG (7) 1.8 0.0018 E18.5 retina GGTCGGCATC 1.8 0.0018 E18.5 retina TGGGTGTTGA (8) 1.8 0.0018 P0.5 retina TTACAAGCCT (2) 19.6 0.0196 P0.5 retina GGGAAGGTGG (6) 3.9 0.0039 P2.5 retina TTACAAGCCT (2) 22.9 0.0229 P2.5 retina GGGAAGGTGG (6) 3.5 0.0035 P2.5 retina GGTCGGCATC 1.8 0.0018 P4.5 retina TTACAAGCCT (2) 9.9 0.0099 P4.5 retina CCCTTGGTAT 2 0.002 P4.5 retina GGTCGGCATC 2 0.002 P4.5 retina TTAAAAGCCT (4) 2 0.002 P6.5 retina TTACAAGCCT (2) 5 0.005 P6.5 retina GGGAAGGTGG (6) 1.7 0.0017 P10.5 crx- retina TTACAAGCCT (2) 3.7 0.0037 P10.5 crx- retina GGGAAGGTGG (6) 1.9 0.0019 P10.5 crx+ retina TTACAAGCCT (2) 13.5 0.0135 P10.5 crx+ retina TTAAAAGCCT (4) 3.8 0.0038 Adult retinal GGTCGGCATC 1.9 0.0019 Adult retinal TTACAAGCCT (2) 1.9 0.0019 ONL GGTCGGCATC 5.7 0.0057 ONL GGGAAGGTGG (6) 1.9 0.0019