Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.24040	Sftpc	surfactant associated protein C	14	14 32.5 cM	20389
Gene Ontology	extracellular | integral to membrane | regulation of liquid surface tension | respiratory gaseous exchange
Human Homolog	SFTPC[surfactant, pulmonary-associated protein C]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 104 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGGTTTTTAT (5) 42.4 0.0424 P8 Cb GC TGCAAGGCCC (5) 4.9 0.0049 P8 Cb GC AGTCAAAAAA (7) 1.6 0.0016 P8 Cb GC CTGGGGTGCG (2) 1.6 0.0016 P8 Cb GC GAAACCTGGG (8) 1.6 0.0016 Cb medulloblastoma AGTCAAAAAA (7) 16.2 0.0162 Cb medulloblastoma TGCAAGGCCC (5) 11.6 0.0116 Cb medulloblastoma GGGTTTTTAT (5) 9.2 0.0092 Cb medulloblastoma CTGGGGTGCG (2) 2.3 0.0023 Cb medulloblastoma GACAAAATAA (7) 2.3 0.0023 Cb medulloblastoma GTAAAAAGAA (3) 2.3 0.0023 P8 GC+1d culture GGGTTTTTAT (5) 34.2 0.0342 P8 GC+1d culture TGCAAGGCCC (5) 8 0.008 P8 GC+1d culture AAGATGGGCT (3) 3.4 0.0034 P8 GC+1d culture AGTCAAAAAA (7) 3.4 0.0034 P8 GC+1d culture CTGGGGTGCG (2) 1.1 0.0011 P8 GC+1d culture GAGGATGGCT (5) 1.1 0.0011 P8 GC+SHH+1d culture GGGTTTTTAT (5) 42.2 0.0422 P8 GC+SHH+1d culture AGTCAAAAAA (7) 8.2 0.0082 P8 GC+SHH+1d culture TGCAAGGCCC (5) 4.7 0.0047 P8 GC+SHH+1d culture CTGGGGTGCG (2) 3.5 0.0035 P8 GC+SHH+1d culture GACAAAATAA (7) 2.3 0.0023 P8 GC+SHH+1d culture GAGGATGGCT (5) 1.2 0.0012 P8 GC+SHH+1d culture GATACTTGGT (2) 1.2 0.0012 P8 GC+SHH+1d culture GTAAAAAGAA (3) 1.2 0.0012 P8 GC+SHH+1d culture GTGGAAGTCC (5) 1.2 0.0012 3T3 fibroblasts TGCAAGGCCC (5) 7 0.007 3T3 fibroblasts GATACTTGGT (2) 3.5 0.0035 E15 cortex GGGTTTTTAT (5) 14.8 0.0148 E15 cortex TGCAAGGCCC (5) 9.9 0.0099 E15 cortex AAGATGGGCT (3) 4.9 0.0049 E15 cortex CTGGGGTGCG (2) 4.9 0.0049 P1 cortex GGGTTTTTAT (5) 50 0.05 P1 cortex GATACTTGGT (2) 18.2 0.0182 P1 cortex TGCAAGGCCC (5) 13.6 0.0136 P1 cortex GTGGAAGTCC (5) 9.1 0.0091 P1 cortex AGTCAAAAAA (7) 4.5 0.0045 P1 cortex GATAGCTTGG (2) 4.5 0.0045 Hypothalamus GGGTTTTTAT (5) 12.7 0.0127 Hypothalamus TGCAAGGCCC (5) 9.1 0.0091 Hypothalamus AGTCAAAAAA (7) 7.2 0.0072 Hypothalamus CTGGGGTGCG (2) 3.6 0.0036 E12.5 retina GGGTTTTTAT (5) 41.3 0.0413 E12.5 retina AAGATGGGCT (3) 1.9 0.0019 E12.5 retina AGTCAAAAAA (7) 1.9 0.0019 E12.5 retina GAAACCTGGG (8) 1.9 0.0019 E12.5 retina GAATACTGGG 1.9 0.0019 E12.5 retina TGCAAGGCCC (5) 1.9 0.0019 E14.5 retina GGGTTTTTAT (5) 114.8 0.1148 E14.5 retina AGTCAAAAAA (7) 10.9 0.0109 E14.5 retina TGCAAGGCCC (5) 9.1 0.0091 E14.5 retina GGAAAAATAA (3) 3.6 0.0036 E14.5 retina GTGGAAGTCC (5) 1.8 0.0018 E16.5 retina GGGTTTTTAT (5) 86.9 0.0869 E16.5 retina TGCAAGGCCC (5) 5.4 0.0054 E16.5 retina AGTCAAAAAA (7) 1.8 0.0018 E18.5 retina GGGTTTTTAT (5) 76.4 0.0764 E18.5 retina AGTCAAAAAA (7) 10.9 0.0109 E18.5 retina TGCAAGGCCC (5) 7.3 0.0073 E18.5 retina GAAGGAAAAT (8) 1.8 0.0018 E18.5 retina GTAAAAAGAA (3) 1.8 0.0018 P0.5 retina GGGTTTTTAT (5) 39.3 0.0393 P0.5 retina TGCAAGGCCC (5) 5.9 0.0059 P0.5 retina AAGATGGGCT (3) 2 0.002 P0.5 retina AGTCAAAAAA (7) 2 0.002 P0.5 retina CTGGGGTGCG (2) 2 0.002 P0.5 retina GAATACTGGG 2 0.002 P0.5 retina GATAGCTTGG (2) 2 0.002 P0.5 retina GTGGAAGTCC (5) 2 0.002 P2.5 retina GGGTTTTTAT (5) 58.1 0.0581 P2.5 retina AGTCAAAAAA (7) 8.8 0.0088 P2.5 retina TGCAAGGCCC (5) 7 0.007 P2.5 retina GGAAAAATAA (3) 1.8 0.0018 P4.5 retina GGGTTTTTAT (5) 57.5 0.0575 P4.5 retina TGCAAGGCCC (5) 7.9 0.0079 P4.5 retina AGTCAAAAAA (7) 2 0.002 P6.5 retina GGGTTTTTAT (5) 35 0.035 P6.5 retina AGTCAAAAAA (7) 10 0.01 P6.5 retina TGCAAGGCCC (5) 10 0.01 P6.5 retina GAAGGAAAAT (8) 1.7 0.0017 P10.5 crx- retina GGGTTTTTAT (5) 26 0.026 P10.5 crx- retina TGCAAGGCCC (5) 7.4 0.0074 P10.5 crx- retina CTGGGGTGCG (2) 5.6 0.0056 P10.5 crx- retina AAGATGGGCT (3) 1.9 0.0019 P10.5 crx- retina AGTCAAAAAA (7) 1.9 0.0019 P10.5 crx- retina GAAGGAAAAT (8) 1.9 0.0019 P10.5 crx- retina GTGGAAGTCC (5) 1.9 0.0019 P10.5 crx+ retina GGGTTTTTAT (5) 19.2 0.0192 P10.5 crx+ retina AGTCAAAAAA (7) 5.8 0.0058 P10.5 crx+ retina TGCAAGGCCC (5) 5.8 0.0058 P10.5 crx+ retina CTGGGGTGCG (2) 3.8 0.0038 P10.5 crx+ retina GTAAAAAGAA (3) 1.9 0.0019 Adult retinal TGCAAGGCCC (5) 11.1 0.0111 Adult retinal AGTCAAAAAA (7) 9.3 0.0093 Adult retinal GGGTTTTTAT (5) 7.4 0.0074 Adult retinal AAGATGGGCT (3) 1.9 0.0019 Adult retinal CTGGGGTGCG (2) 1.9 0.0019 Adult retinal GAAACCTGGG (8) 1.9 0.0019 Adult retinal GAATACTGGG 1.9 0.0019 ONL GGGTTTTTAT (5) 15.3 0.0153 ONL AGTCAAAAAA (7) 3.8 0.0038 ONL TGCAAGGCCC (5) 3.8 0.0038 ONL GAGGATGGCT (5) 1.9 0.0019 ONL GGAAAAATAA (3) 1.9 0.0019