Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.24083	Tardbp	TAR DNA binding protein	4		230908
Gene Ontology	DNA binding | nucleus | regulation of transcription, DNA-dependent | RNA binding
Human Homolog	TARDBP[TAR DNA binding protein]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 119 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TCTGTTAGCT 14.7 0.0147 P8 Cb GC GTGGCGCACA (11) 8.2 0.0082 P8 Cb GC GACGTTGTCT (2) 3.3 0.0033 P8 Cb GC GATCCTAAGT (2) 3.3 0.0033 P8 Cb GC ACTCAAATGG 1.6 0.0016 P8 Cb GC GTGTTTGATT (2) 1.6 0.0016 P8 Cb GC TAGACAGAAG (3) 1.6 0.0016 P8 Cb GC TTAGCCAGCC (3) 1.6 0.0016 P8 Cb GC TTCGCAGCCC 1.6 0.0016 P8 Cb GC TTTATGGATG (4) 1.6 0.0016 Cb medulloblastoma ACTCAAATGG 4.6 0.0046 Cb medulloblastoma GATCCTAAGT (2) 2.3 0.0023 Cb medulloblastoma TCTGTTAGCT 2.3 0.0023 Cb medulloblastoma TTATAAAAAA (6) 2.3 0.0023 Cb medulloblastoma TTTATGGATG (4) 2.3 0.0023 P8 GC+1d culture TCTGTTAGCT 13.7 0.0137 P8 GC+1d culture GTGGCGCACA (11) 3.4 0.0034 P8 GC+1d culture ACTCAAATGG 2.3 0.0023 P8 GC+1d culture TCTGTTAGCC (3) 2.3 0.0023 P8 GC+1d culture TTCGCAGCCC 2.3 0.0023 P8 GC+1d culture TTTATGGATG (4) 2.3 0.0023 P8 GC+1d culture CTTTCTCATC 1.1 0.0011 P8 GC+1d culture TAGACAGAAG (3) 1.1 0.0011 P8 GC+1d culture TGTTATAACT (3) 1.1 0.0011 P8 GC+1d culture TTAGCCAGCC (3) 1.1 0.0011 P8 GC+SHH+1d culture TCTGTTAGCT 18.7 0.0187 P8 GC+SHH+1d culture CTTTCTCATC 3.5 0.0035 P8 GC+SHH+1d culture GTGGCGCACA (11) 3.5 0.0035 P8 GC+SHH+1d culture TTTATGGATG (4) 2.3 0.0023 P8 GC+SHH+1d culture TTATAAAAAA (6) 1.2 0.0012 3T3 fibroblasts GTGGCGCACA (11) 28 0.028 E15 cortex GTGGCGCACA (11) 44.5 0.0445 E15 cortex TCTGTTAGCT 9.9 0.0099 P1 cortex TCTGTTAGCT 13.6 0.0136 P1 cortex CTTTCTCATC 4.5 0.0045 P1 cortex GTGGCGCACA (11) 4.5 0.0045 Hypothalamus GATCCTAAGT (2) 3.6 0.0036 Hypothalamus GTGGCGCACA (11) 3.6 0.0036 Hypothalamus TCTGTTAGCT 3.6 0.0036 Hypothalamus ACTCAAATGG 1.8 0.0018 Hypothalamus CTTTCTCATC 1.8 0.0018 Hypothalamus TTTATGGATG (4) 1.8 0.0018 E12.5 retina TCTGTTAGCT 13.1 0.0131 E12.5 retina GTGTTTGATT (2) 5.6 0.0056 E12.5 retina ACTCAAATGG 3.8 0.0038 E12.5 retina CTTTCTCATC 3.8 0.0038 E12.5 retina GTGGCGCACA (11) 3.8 0.0038 E12.5 retina TAGACAGAAG (3) 3.8 0.0038 E12.5 retina TTCAGAGTAG 3.8 0.0038 E12.5 retina TGTTATAACT (3) 1.9 0.0019 E14.5 retina TCTGTTAGCT 25.5 0.0255 E14.5 retina GTGGCGCACA (11) 10.9 0.0109 E14.5 retina TTTATGGATG (4) 3.6 0.0036 E14.5 retina ACTCAAATGG 1.8 0.0018 E14.5 retina TAGACAGAAG (3) 1.8 0.0018 E14.5 retina TCTGTTAGCC (3) 1.8 0.0018 E16.5 retina TCTGTTAGCT 14.5 0.0145 E16.5 retina ACTCAAATGG 10.9 0.0109 E16.5 retina GTGGCGCACA (11) 9.1 0.0091 E16.5 retina TGTTATAACT (3) 5.4 0.0054 E16.5 retina CTTTCTCATC 3.6 0.0036 E16.5 retina TTCGCAGCCC 3.6 0.0036 E16.5 retina GACGTTGTCT (2) 1.8 0.0018 E18.5 retina TCTGTTAGCT 12.7 0.0127 E18.5 retina ACTCAAATGG 5.5 0.0055 E18.5 retina GTGGCGCACA (11) 5.5 0.0055 E18.5 retina GTGTTTGATT (2) 3.6 0.0036 E18.5 retina TAAACAGAAT (3) 1.8 0.0018 E18.5 retina TAGACAGAAG (3) 1.8 0.0018 P0.5 retina GTGGCGCACA (11) 5.9 0.0059 P0.5 retina TCTGTTAGCT 5.9 0.0059 P0.5 retina TAGACAGAAG (3) 3.9 0.0039 P0.5 retina ACTCAAATGG 2 0.002 P0.5 retina GACGTTGTCT (2) 2 0.002 P0.5 retina GATCCTAAGT (2) 2 0.002 P0.5 retina GTGTTTGATT (2) 2 0.002 P0.5 retina TTTATGGATG (4) 2 0.002 P2.5 retina TCTGTTAGCT 15.8 0.0158 P2.5 retina GTGGCGCACA (11) 7 0.007 P2.5 retina CTTTCTCATC 5.3 0.0053 P2.5 retina TAGACAGAAG (3) 5.3 0.0053 P2.5 retina TTTATGGATG (4) 3.5 0.0035 P2.5 retina TTATAAAAAA (6) 1.8 0.0018 P4.5 retina GTGGCGCACA (11) 7.9 0.0079 P4.5 retina TTCAGAGTAG 4 0.004 P4.5 retina ACTCAAATGG 2 0.002 P4.5 retina CTTTCTCATC 2 0.002 P4.5 retina TAAACAGAAT (3) 2 0.002 P4.5 retina TAGACAGAAG (3) 2 0.002 P4.5 retina TTATAAAAAA (6) 2 0.002 P6.5 retina GTGGCGCACA (11) 11.7 0.0117 P6.5 retina TCTGTTAGCT 10 0.01 P6.5 retina ACTCAAATGG 5 0.005 P6.5 retina GTGTTTGATT (2) 5 0.005 P6.5 retina TAGACAGAAG (3) 1.7 0.0017 P6.5 retina TGTTATAACT (3) 1.7 0.0017 P6.5 retina TTCGCAGCCC 1.7 0.0017 P10.5 crx- retina TCTGTTAGCT 16.7 0.0167 P10.5 crx- retina ACTCAAATGG 11.1 0.0111 P10.5 crx- retina GTGGCGCACA (11) 5.6 0.0056 P10.5 crx- retina TGTTATAACT (3) 1.9 0.0019 P10.5 crx- retina TTAGCCAGCC (3) 1.9 0.0019 P10.5 crx- retina TTTATGGATG (4) 1.9 0.0019 P10.5 crx+ retina GTGGCGCACA (11) 11.5 0.0115 P10.5 crx+ retina TCTGTTAGCT 9.6 0.0096 P10.5 crx+ retina TTTATGGATG (4) 5.8 0.0058 P10.5 crx+ retina ACTCAAATGG 1.9 0.0019 P10.5 crx+ retina GTGTTTGATT (2) 1.9 0.0019 P10.5 crx+ retina TAGACAGAAG (3) 1.9 0.0019 P10.5 crx+ retina TTAGCCAGCC (3) 1.9 0.0019 Adult retinal GTGGCGCACA (11) 22.2 0.0222 Adult retinal ACTCAAATGG 3.7 0.0037 Adult retinal CTTTCTCATC 1.9 0.0019 Adult retinal TCTGTTAGCT 1.9 0.0019 Adult retinal TTTATGGATG (4) 1.9 0.0019 ONL GTGGCGCACA (11) 13.4 0.0134 ONL GTGTTTGATT (2) 1.9 0.0019 ONL TAAACAGAAT (3) 1.9 0.0019 ONL TAGACAGAAG (3) 1.9 0.0019