Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.240871	Wdr9	WD repeat domain 9	16		93871
Gene Ontology	nucleus | protein binding | regulation of transcription from Pol II promoter | transcription regulator activity
Human Homolog	C21orf107[chromosome 21 open reading frame 107]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 113 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GATTCCTCAC (5) 26.1 0.0261 P8 Cb GC TTTATAAACT (3) 11.4 0.0114 P8 Cb GC AATGAATAAA (3) 4.9 0.0049 P8 Cb GC AGCTGATGTA 1.6 0.0016 P8 Cb GC GCTGTGAACT (5) 1.6 0.0016 P8 Cb GC GTTAGTAGGC 1.6 0.0016 P8 Cb GC TGACTGCTGA (2) 1.6 0.0016 P8 Cb GC TGCTTGAGGT 1.6 0.0016 Cb medulloblastoma GATTCCTCAC (5) 9.2 0.0092 Cb medulloblastoma AATGAATAAA (3) 4.6 0.0046 Cb medulloblastoma TTTATAAACT (3) 4.6 0.0046 Cb medulloblastoma AGCTGATGTA 2.3 0.0023 Cb medulloblastoma CCTGCTTAAA 2.3 0.0023 Cb medulloblastoma GACTTGGTAA (3) 2.3 0.0023 Cb medulloblastoma GCTGTGAACT (5) 2.3 0.0023 P8 GC+1d culture GATTCCTCAC (5) 14.8 0.0148 P8 GC+1d culture AGCTGATGTA 4.6 0.0046 P8 GC+1d culture TTTATAAACT (3) 4.6 0.0046 P8 GC+1d culture ATAAAAAAAC (3) 2.3 0.0023 P8 GC+1d culture AATGAATAAA (3) 1.1 0.0011 P8 GC+1d culture CCTGCTTAAA 1.1 0.0011 P8 GC+1d culture GCTGTGAACT (5) 1.1 0.0011 P8 GC+SHH+1d culture GATTCCTCAC (5) 44.5 0.0445 P8 GC+SHH+1d culture TTTATAAACT (3) 12.9 0.0129 P8 GC+SHH+1d culture AATGAATAAA (3) 3.5 0.0035 P8 GC+SHH+1d culture AGCTGATGTA 3.5 0.0035 P8 GC+SHH+1d culture TGCTTGAGGT 2.3 0.0023 P8 GC+SHH+1d culture AAATGAAAAT (10) 1.2 0.0012 P8 GC+SHH+1d culture CCTGCTTAAA 1.2 0.0012 P8 GC+SHH+1d culture GCTGTGAACT (5) 1.2 0.0012 P8 GC+SHH+1d culture TGACTGCTGA (2) 1.2 0.0012 3T3 fibroblasts GCTGTGAACT (5) 3.5 0.0035 E15 cortex GATTCCTCAC (5) 4.9 0.0049 P1 cortex AAATGAAAAT (10) 4.5 0.0045 P1 cortex AGCTGATGTA 4.5 0.0045 P1 cortex CCTGCTTAAA 4.5 0.0045 Hypothalamus AATGAATAAA (3) 9.1 0.0091 Hypothalamus GATTCCTCAC (5) 3.6 0.0036 Hypothalamus TTTATAAACT (3) 3.6 0.0036 Hypothalamus AGCTGATGTA 1.8 0.0018 Hypothalamus GACTTGGTAA (3) 1.8 0.0018 Hypothalamus TGGCTCCTGA (3) 1.8 0.0018 E12.5 retina GATTCCTCAC (5) 7.5 0.0075 E12.5 retina AATGAATAAA (3) 5.6 0.0056 E12.5 retina TTTATAAACT (3) 5.6 0.0056 E12.5 retina AGCTGATGTA 1.9 0.0019 E12.5 retina GACTTGGTAA (3) 1.9 0.0019 E12.5 retina GCTGTGAACT (5) 1.9 0.0019 E14.5 retina AATGAATAAA (3) 12.8 0.0128 E14.5 retina GATTCCTCAC (5) 7.3 0.0073 E14.5 retina AGGCAGTGTG (2) 3.6 0.0036 E14.5 retina TTTATAAACT (3) 3.6 0.0036 E14.5 retina CCTGCTTAAA 1.8 0.0018 E14.5 retina GCTGTGAACT (5) 1.8 0.0018 E16.5 retina TTTATAAACT (3) 10.9 0.0109 E16.5 retina AATGAATAAA (3) 5.4 0.0054 E16.5 retina GATTCCTCAC (5) 5.4 0.0054 E16.5 retina GCTGTGAACT (5) 5.4 0.0054 E16.5 retina AGCTGATGTA 1.8 0.0018 E16.5 retina AGGCAGTGTG (2) 1.8 0.0018 E16.5 retina TGGCTCCTGA (3) 1.8 0.0018 E18.5 retina AATGAATAAA (3) 9.1 0.0091 E18.5 retina GATTCCTCAC (5) 9.1 0.0091 E18.5 retina TTTATAAACT (3) 7.3 0.0073 E18.5 retina GACTTGGTAA (3) 3.6 0.0036 E18.5 retina AGCTGATGTA 1.8 0.0018 P0.5 retina TTTATAAACT (3) 17.7 0.0177 P0.5 retina GATTCCTCAC (5) 7.9 0.0079 P0.5 retina AAATGAAAAT (10) 2 0.002 P0.5 retina AGCTGATGTA 2 0.002 P0.5 retina GAACAATGAA (4) 2 0.002 P0.5 retina GACTTGGTAA (3) 2 0.002 P2.5 retina GATTCCTCAC (5) 8.8 0.0088 P2.5 retina TTTATAAACT (3) 7 0.007 P2.5 retina AATGAATAAA (3) 5.3 0.0053 P2.5 retina CCTGCTTAAA 5.3 0.0053 P2.5 retina AAATGAAAAT (10) 1.8 0.0018 P2.5 retina GAACAATGAA (4) 1.8 0.0018 P2.5 retina TGACTGCTGA (2) 1.8 0.0018 P2.5 retina TGCTTGAGGT 1.8 0.0018 P2.5 retina TGGCTCCTGA (3) 1.8 0.0018 P4.5 retina GATTCCTCAC (5) 11.9 0.0119 P4.5 retina AGCTGATGTA 7.9 0.0079 P4.5 retina AATGAATAAA (3) 4 0.004 P4.5 retina TTTATAAACT (3) 4 0.004 P4.5 retina ATAAAAAAAC (3) 2 0.002 P4.5 retina CCTGCTTAAA 2 0.002 P4.5 retina GACTTGGTAA (3) 2 0.002 P4.5 retina TGGCTCCTGA (3) 2 0.002 P6.5 retina TTTATAAACT (3) 16.7 0.0167 P6.5 retina AATGAATAAA (3) 8.3 0.0083 P6.5 retina GATTCCTCAC (5) 5 0.005 P6.5 retina AAATGAAAAT (10) 1.7 0.0017 P6.5 retina CCTGCTTAAA 1.7 0.0017 P10.5 crx- retina AGCTGATGTA 9.3 0.0093 P10.5 crx- retina TTTATAAACT (3) 5.6 0.0056 P10.5 crx- retina TGCTTGAGGT 3.7 0.0037 P10.5 crx- retina AGGCAGTGTG (2) 1.9 0.0019 P10.5 crx- retina ATAAAAAAAC (3) 1.9 0.0019 P10.5 crx- retina GATTCCTCAC (5) 1.9 0.0019 P10.5 crx+ retina TTTATAAACT (3) 17.3 0.0173 P10.5 crx+ retina GATTCCTCAC (5) 9.6 0.0096 P10.5 crx+ retina AATGAATAAA (3) 3.8 0.0038 P10.5 crx+ retina GTTAGTAGGC 3.8 0.0038 P10.5 crx+ retina AGGCAGTGTG (2) 1.9 0.0019 Adult retinal AGCTGATGTA 1.9 0.0019 Adult retinal CCTGCTTAAA 1.9 0.0019 Adult retinal GACTTGGTAA (3) 1.9 0.0019 Adult retinal TGCTTGAGGT 1.9 0.0019 ONL TTTATAAACT (3) 9.6 0.0096 ONL AAATGAAAAT (10) 1.9 0.0019 ONL AATGAATAAA (3) 1.9 0.0019 ONL CCTGCTTAAA 1.9 0.0019