| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAATAAACT (2) TGGTGAGTAG TTTATTTTTT (2)
| 4.8 | 0.0048 |
| P8 GC+1d culture | AAAATAAACT (2) GCTGCAGATG (3) GGCTGGGGTG (2) TTTATTTTTT (2)
| 6.7 | 0.0067 |
| P8 GC+SHH+1d culture | TTTATTTTTT (2)
| 4.7 | 0.0047 |
| 3T3 fibroblasts | GCTGCAGATG (3)
| 3.5 | 0.0035 |
| E15 cortex | TCACACCAGG (2)
| 4.9 | 0.0049 |
| Hypothalamus | AAAATAAACT (2) TCACACCAGG (2)
| 3.6 | 0.0036 |
| E12.5 retina | AAAATAAACT (2) GCTGCAGATG (3) GGCTGGGGTG (2)
| 5.7 | 0.0057 |
| E14.5 retina | AAAATAAACT (2) TTTATTTTTT (2)
| 10.9 | 0.0109 |
| E16.5 retina | AAAATAAACT (2) GGCTGGGGTG (2) TGGTGAGTAG
| 9 | 0.009 |
| E18.5 retina | AAAATAAACT (2) TCACACCAGG (2) TTTATTTTTT (2)
| 9.1 | 0.0091 |
| P0.5 retina | AAAATAAACT (2) GGCTGGGGTG (2) TCACACCAGG (2)
| 6 | 0.006 |
| P2.5 retina | AAAATAAACT (2) TCACACCAGG (2) TGGTGAGTAG TTTATTTTTT (2)
| 12.4 | 0.0124 |
| P4.5 retina | AAAATAAACT (2) TCACACCAGG (2)
| 6 | 0.006 |
| P6.5 retina | AAAATAAACT (2) TTTATTTTTT (2)
| 3.4 | 0.0034 |
| P10.5 crx- retina | TCACACCAGG (2) TTTATTTTTT (2)
| 5.6 | 0.0056 |
| P10.5 crx+ retina | TCACACCAGG (2)
| 1.9 | 0.0019 |
| ONL | AAAATAAACT (2) GCTGCAGATG (3) TTTATTTTTT (2)
| 7.6 | 0.0076 |