Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.242324	Sept2	septin 2	1		18000
Gene Ontology	cell cycle | GTP binding | protein binding | synaptosome
Human Homolog	NEDD5[neural precursor cell expressed, developmentally down-regulated 5]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 133 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC TGGCCCAAAT (4) 70.1 0.0701 P8 Cb GC TTTTTGAGTT 9.8 0.0098 P8 Cb GC GTTGTTTATG 6.5 0.0065 P8 Cb GC TTGACTGATT 6.5 0.0065 P8 Cb GC CAGTCCTTTG (4) 3.3 0.0033 P8 Cb GC GACTGAAGCC (6) 3.3 0.0033 P8 Cb GC TCTTCCCTGA (3) 3.3 0.0033 P8 Cb GC TGTGAGGCCG 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma TGGCCCAAAT (4) 18.5 0.0185 Cb medulloblastoma CTCAAAAAAA (13) 6.9 0.0069 Cb medulloblastoma CAGTCCTTTG (4) 2.3 0.0023 Cb medulloblastoma GGAATAAAAG (7) 2.3 0.0023 Cb medulloblastoma TGTGAGGCCG 2.3 0.0023 Cb medulloblastoma TGTTTGAGTT (3) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture TGGCCCAAAT (4) 44.5 0.0445 P8 GC+1d culture TGTTTGAGTT (3) 6.8 0.0068 P8 GC+1d culture TTTTTGAGTT 6.8 0.0068 P8 GC+1d culture CTCAAAAAAA (13) 5.7 0.0057 P8 GC+1d culture GACTGAAGCC (6) 4.6 0.0046 P8 GC+1d culture ATGCTGCCAG (4) 1.1 0.0011 P8 GC+1d culture GAGCTGCAGA (6) 1.1 0.0011 P8 GC+1d culture TGTGAGGCCG 1.1 0.0011 P8 GC+1d culture TTGACTGATT 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture TGGCCCAAAT (4) 58.5 0.0585 P8 GC+SHH+1d culture TTTTTGAGTT 4.7 0.0047 P8 GC+SHH+1d culture TGTTTGAGTT (3) 3.5 0.0035 P8 GC+SHH+1d culture TTGACTGATT 3.5 0.0035 P8 GC+SHH+1d culture ATGCTGCCAG (4) 1.2 0.0012 P8 GC+SHH+1d culture CTCAAAAAAA (13) 1.2 0.0012 P8 GC+SHH+1d culture GGCCTTGAAA (4) 1.2 0.0012 P8 GC+SHH+1d culture GTTGTTTATG 1.2 0.0012 P8 GC+SHH+1d culture TCTTCCCTGA (3) 1.2 0.0012 3T3 fibroblasts TGGCCCAAAT (4) 84.1 0.0841 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts TGTGAGGCCG 7 0.007 3T3 fibroblasts TTGACTGATT 7 0.007 3T3 fibroblasts CAGTCCTTTG (4) 3.5 0.0035 3T3 fibroblasts CTCAAAAAAA (13) 3.5 0.0035 3T3 fibroblasts TTTTTGAGTT 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex TGGCCCAAAT (4) 84.1 0.0841 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex TTGACTGATT 18.2 0.0182 P1 cortex TGGCCCAAAT (4) 13.6 0.0136 P1 cortex GAGCTGCAGA (6) 9.1 0.0091 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus TGGCCCAAAT (4) 32.6 0.0326 Hypothalamus GACTGAAGCC (6) 3.6 0.0036 Hypothalamus TGTTTGAGTT (3) 3.6 0.0036 Hypothalamus GGAATAAAAG (7) 1.8 0.0018 Hypothalamus TGTGAGGCCG 1.8 0.0018 Hypothalamus TTTTTGAGTT 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina TGGCCCAAAT (4) 50.7 0.0507 E12.5 retina CTCAAAAAAA (13) 1.9 0.0019 E12.5 retina TGTGAGGCCG 1.9 0.0019 E12.5 retina TTGACTGATT 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina TGGCCCAAAT (4) 27.3 0.0273 E14.5 retina TGTTTGAGTT (3) 3.6 0.0036 E14.5 retina CTCAAAAAAA (13) 1.8 0.0018 E14.5 retina GTTGTTTATG 1.8 0.0018 E16.5 retina TGGCCCAAAT (4) 61.6 0.0616 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina TGTTTGAGTT (3) 3.6 0.0036 E16.5 retina CAGTCCTTTG (4) 1.8 0.0018 E16.5 retina GGCCTTGAAA (4) 1.8 0.0018 E16.5 retina GTTGTTTATG 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina TGGCCCAAAT (4) 47.3 0.0473 E18.5 retina TGTTTGAGTT (3) 7.3 0.0073 E18.5 retina CTCAAAAAAA (13) 1.8 0.0018 E18.5 retina GTTGTTTATG 1.8 0.0018 E18.5 retina TCTTCCCTGA (3) 1.8 0.0018 E18.5 retina TGTGAGGCCG 1.8 0.0018 E18.5 retina TTTTTGAGTT 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina TGGCCCAAAT (4) 80.5 0.0805 P0.5 retina CAGTCCTTTG (4) 2 0.002 P0.5 retina GGAATAAAAG (7) 2 0.002 P0.5 retina TGTGAGGCCG 2 0.002 P0.5 retina TGTTTGAGTT (3) 2 0.002 P0.5 retina TTGACTGATT 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina TGGCCCAAAT (4) 15.8 0.0158 P2.5 retina TGTGAGGCCG 5.3 0.0053 P2.5 retina ATGCTGCCAG (4) 1.8 0.0018 P2.5 retina CTCAAAAAAA (13) 1.8 0.0018 P2.5 retina TTGACTGATT 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina TGGCCCAAAT (4) 19.8 0.0198 P4.5 retina CTCAAAAAAA (13) 5.9 0.0059 P4.5 retina GTTGTTTATG 4 0.004 P4.5 retina TGTGAGGCCG 2 0.002 P4.5 retina TTGACTGATT 2 0.002 P4.5 retina TTTTTGAGTT 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina TGGCCCAAAT (4) 20 0.02 P6.5 retina TGTGAGGCCG 3.3 0.0033 P6.5 retina TTTTTGAGTT 3.3 0.0033 P6.5 retina GGCCTTGAAA (4) 1.7 0.0017 P6.5 retina GTTGTTTATG 1.7 0.0017 P6.5 retina TGTTTGAGTT (3) 1.7 0.0017 P6.5 retina TTGACTGATT 1.7 0.0017 P10.5 crx- retina TGGCCCAAAT (4) 46.4 0.0464 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina TTTTTGAGTT 9.3 0.0093 P10.5 crx- retina TCTTCCCTGA (3) 3.7 0.0037 P10.5 crx- retina TGTTTGAGTT (3) 3.7 0.0037 P10.5 crx- retina TTGACTGATT 3.7 0.0037 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina TGGCCCAAAT (4) 38.4 0.0384 P10.5 crx+ retina TGTGAGGCCG 3.8 0.0038 P10.5 crx+ retina TTTTTGAGTT 3.8 0.0038 P10.5 crx+ retina GAGCTGCAGA (6) 1.9 0.0019 P10.5 crx+ retina TCTTCCCTGA (3) 1.9 0.0019 P10.5 crx+ retina TGTTTGAGTT (3) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal TGGCCCAAAT (4) 33.3 0.0333 Adult retinal TGTTTGAGTT (3) 3.7 0.0037 Adult retinal CTCAAAAAAA (13) 1.9 0.0019 Adult retinal TGTGAGGCCG 1.9 0.0019 Adult retinal TTTTTGAGTT 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL TGGCCCAAAT (4) 26.8 0.0268 ONL CAGTCCTTTG (4) 3.8 0.0038 ONL TCTTCCCTGA (3) 3.8 0.0038 ONL CTCAAAAAAA (13) 1.9 0.0019 ONL TTTTTGAGTT 1.9 0.0019