Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.244179	Herc1	hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1	9		235439
Human Homolog	HERC1[hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 68 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC AAGAGAAACC (5) 3.3 0.0033 P8 Cb GC AATATTCATA (2) 1.6 0.0016 P8 Cb GC TACATATCTG (5) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma AAGAGAAACC (5) 131.8 0.1318 Cb medulloblastoma CAAACTTATC (2) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture AAGAGAAACC (5) 8 0.008 P8 GC+1d culture TACATATCTG (5) 4.6 0.0046 P8 GC+1d culture AATATTCATA (2) 2.3 0.0023 P8 GC+1d culture CAAACTTATC (2) 1.1 0.0011 P8 GC+1d culture CTCTCAAGAA (3) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture AAGAGAAACC (5) 3.5 0.0035 P8 GC+SHH+1d culture TACATATCTG (5) 2.3 0.0023 P8 GC+SHH+1d culture AATATTCATA (2) 1.2 0.0012 P8 GC+SHH+1d culture CTCTCAAGAA (3) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex ATGGGCTGTG (6) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus AAGAGAAACC (5) 97.8 0.0978 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina CAAACTTATC (2) 3.8 0.0038 E12.5 retina AATATTCATA (2) 1.9 0.0019 E12.5 retina ATGGGCTGTG (6) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina TACATATCTG (5) 1.8 0.0018 E14.5 retina TTCACTGGGT (2) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina TACATATCTG (5) 5.4 0.0054 E16.5 retina AATATTCATA (2) 1.8 0.0018 E16.5 retina CAAACTTATC (2) 1.8 0.0018 E16.5 retina CTCTCAAGAA (3) 1.8 0.0018 E16.5 retina TTCACTGGGT (2) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina TACATATCTG (5) 3.6 0.0036 E18.5 retina AAGAGAAACC (5) 1.8 0.0018 E18.5 retina AATATTCATA (2) 1.8 0.0018 E18.5 retina TTCACTGGGT (2) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina AAGAGAAACC (5) 5.9 0.0059 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina AATATTCATA (2) 5.3 0.0053 P2.5 retina TACATATCTG (5) 5.3 0.0053 P2.5 retina AAGAGAAACC (5) 1.8 0.0018 P2.5 retina CTCTCAAGAA (3) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina TACATATCTG (5) 11.9 0.0119 P4.5 retina AATATTCATA (2) 4 0.004 P4.5 retina AAGAGAAACC (5) 2 0.002 P4.5 retina TTCACTGGGT (2) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina AAGAGAAACC (5) 18.3 0.0183 P6.5 retina TACATATCTG (5) 3.3 0.0033 P6.5 retina AATATTCATA (2) 1.7 0.0017 P6.5 retina TTCACTGGGT (2) 1.7 0.0017 P10.5 crx- retina AAGAGAAACC (5) 50.2 0.0502 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina AAGAGAAACC (5) 34.6 0.0346 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal AAGAGAAACC (5) 24.1 0.0241 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL AAGAGAAACC (5) 5.7 0.0057 ONL AATATTCATA (2) 3.8 0.0038