Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.244975	Brca1	breast cancer 1	11	11 60.5 cM	12189
Gene Ontology	carbohydrate metabolism | centrosome cycle | condensed chromosome | cytoplasm | damaged DNA binding | DNA binding | DNA damage response, signal transduction resulting in induction of apoptosis | DNA repair | dosage compensation, by inactivation of X chromosome | hydrolase activity, hydrolyzing O-glycosyl compounds | intracellular | negative regulation of cell cycle | nucleus | nucleus | protein binding | protein binding | protein ubiquitination | RNA binding | ubiquitin ligase complex | ubiquitin-protein ligase activity | zinc ion binding
Human Homolog	BRCA1[breast cancer 1, early onset]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 60 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC TCTATCTCAG (2) 6.5 0.0065 P8 Cb GC AAAAATATGT (4) 1.6 0.0016 P8 Cb GC AATTTGAAGT (2) 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma TCTATCTCAG (2) 2.3 0.0023 Cb medulloblastoma TTCATAAAGG (3) 2.3 0.0023 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture TCTATTCTCA (6) 1.1 0.0011 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture AACTCATAAT (11) 2.3 0.0023 P8 GC+SHH+1d culture TCTATCTCAG (2) 2.3 0.0023 P8 GC+SHH+1d culture GCTGCTCTAG 1.2 0.0012 P8 GC+SHH+1d culture TCTATTCTCA (6) 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts TCTATCTCAG (2) 3.5 0.0035 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex GCTGCTCTAG 4.9 0.0049 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex TCTATCTCAG (2) 13.6 0.0136 P1 cortex GCTGCTCTAG 4.5 0.0045 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus TCTATCTCAG (2) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina AACTCATAAT (11) 3.8 0.0038 E12.5 retina AATTTGAAGT (2) 3.8 0.0038 E12.5 retina TCTATCTCAG (2) 3.8 0.0038 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina AACTCATAAT (11) 3.6 0.0036 E14.5 retina AATTTGAAGT (2) 1.8 0.0018 E14.5 retina TCTATCTCAG (2) 1.8 0.0018 E14.5 retina TCTATTCTCA (6) 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina TCTATCTCAG (2) 7.2 0.0072 E16.5 retina AAAAATATGT (4) 1.8 0.0018 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina GCTGCTCTAG 1.8 0.0018 E18.5 retina TCTATCTCAG (2) 1.8 0.0018 E18.5 retina TCTATTCTCA (6) 1.8 0.0018 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina TCTATCTCAG (2) 2 0.002 P0.5 retina TTCATAAAGG (3) 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina AAAAATATGT (4) 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina TCTATTCTCA (6) 5 0.005 P6.5 retina TTCATAAAGG (3) 3.3 0.0033 P6.5 retina AATTTGAAGT (2) 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina TCTATCTCAG (2) 7.4 0.0074 P10.5 crx- retina TCTATTCTCA (6) 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina AATTTGAAGT (2) 1.9 0.0019 P10.5 crx+ retina TCTATCTCAG (2) 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal TCTATCTCAG (2) 3.7 0.0037 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL AATTTGAAGT (2) 1.9 0.0019 ONL TCTATCTCAG (2) 1.9 0.0019