Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.24503
Scrg3
scrapie responsive gene 3
15
20286
Human Homolog
RoXaN[rotavirus X protein associated with NSP3]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 57 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TGGTTGCTGG (
369
)
68.5
0.0685
P8 Cb GC
GGGGGGGGCA (
8
)
3.3
0.0033
P8 Cb GC
GACCCTCCAG (
4
)
1.6
0.0016
P8 Cb GC
GCCGTGAATG
(
2
)
1.6
0.0016
P8 Cb GC
GGGTGAGGGT
(
8
)
1.6
0.0016
Cb medulloblastoma
TGGTTGCTGG (
369
)
113.3
0.1133
Cb medulloblastoma
GGGTGAGGGT
(
8
)
4.6
0.0046
P8 GC+1d culture
TGGTTGCTGG (
369
)
57.1
0.0571
P8 GC+1d culture
GGGTGAGGGT
(
8
)
14.8
0.0148
P8 GC+1d culture
GGGGGGGGCA (
8
)
9.1
0.0091
P8 GC+1d culture
GACCCTCCAG (
4
)
1.1
0.0011
P8 GC+SHH+1d culture
TGGTTGCTGG (
369
)
89
0.089
P8 GC+SHH+1d culture
GGGTGAGGGT
(
8
)
8.2
0.0082
P8 GC+SHH+1d culture
GGGGGGGGCA (
8
)
4.7
0.0047
3T3 fibroblasts
TGGTTGCTGG (
369
)
220.8
0.2208
3T3 fibroblasts
GCCGTGAATG
(
2
)
7
0.007
3T3 fibroblasts
GGGTGAGGGT
(
8
)
3.5
0.0035
E15 cortex
TGGTTGCTGG (
369
)
277.1
0.2771
P1 cortex
TGGTTGCTGG (
369
)
86.4
0.0864
P1 cortex
GGGTGAGGGT
(
8
)
9.1
0.0091
P1 cortex
GAAGAGAGAG (
3
)
4.5
0.0045
Hypothalamus
TGGTTGCTGG (
369
)
349.6
0.3496
Hypothalamus
GGGTGAGGGT
(
8
)
9.1
0.0091
Hypothalamus
GAAGAGAGAG (
3
)
1.8
0.0018
Hypothalamus
GACCCTCCAG (
4
)
1.8
0.0018
E12.5 retina
TGGTTGCTGG (
369
)
157.7
0.1577
E12.5 retina
GGGTGAGGGT
(
8
)
9.4
0.0094
E14.5 retina
TGGTTGCTGG (
369
)
936.5
0.9365
E16.5 retina
TGGTTGCTGG (
369
)
767.9
0.7679
E16.5 retina
GCCGTGAATG
(
2
)
1.8
0.0018
E16.5 retina
GGGTGAGGGT
(
8
)
1.8
0.0018
E18.5 retina
TGGTTGCTGG (
369
)
252.8
0.2528
E18.5 retina
GAAGAGAGAG (
3
)
1.8
0.0018
E18.5 retina
GCCGTGAATG
(
2
)
1.8
0.0018
E18.5 retina
GGGTGAGGGT
(
8
)
1.8
0.0018
P0.5 retina
TGGTTGCTGG (
369
)
190.4
0.1904
P0.5 retina
GGGTGAGGGT
(
8
)
9.8
0.0098
P0.5 retina
GGCCACTATG
(
2
)
3.9
0.0039
P2.5 retina
TGGTTGCTGG (
369
)
165.4
0.1654
P2.5 retina
GGGTGAGGGT
(
8
)
8.8
0.0088
P4.5 retina
TGGTTGCTGG (
369
)
150.6
0.1506
P4.5 retina
GGGTGAGGGT
(
8
)
5.9
0.0059
P4.5 retina
GGCCACTATG
(
2
)
2
0.002
P6.5 retina
TGGTTGCTGG (
369
)
156.7
0.1567
P6.5 retina
GGGTGAGGGT
(
8
)
20
0.02
P10.5 crx- retina
TGGTTGCTGG (
369
)
280.5
0.2805
P10.5 crx- retina
GGGTGAGGGT
(
8
)
14.9
0.0149
P10.5 crx+ retina
TGGTTGCTGG (
369
)
101.9
0.1019
P10.5 crx+ retina
GCCGTGAATG
(
2
)
1.9
0.0019
P10.5 crx+ retina
GGGGGGGGCA (
8
)
1.9
0.0019
P10.5 crx+ retina
GGGTGAGGGT
(
8
)
1.9
0.0019
Adult retinal
TGGTTGCTGG (
369
)
214.8
0.2148
Adult retinal
GCCGTGAATG
(
2
)
3.7
0.0037
Adult retinal
GGGTGAGGGT
(
8
)
3.7
0.0037
Adult retinal
GGCCACTATG
(
2
)
1.9
0.0019
ONL
TGGTTGCTGG (
369
)
398.4
0.3984
ONL
GGGGGGGGCA (
8
)
1.9
0.0019
