Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.245746	Rdx	radixin	9		19684
Gene Ontology	actin binding | apical protein localization | cytoplasm | cytoskeletal protein binding | cytoskeleton | membrane | microvillus | microvillus biogenesis | protein binding | structural molecule activity
Human Homolog	RDX[radixin]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 183 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTGGCGCACG (61) 13.1 0.0131 P8 Cb GC ATGTTAAAAA (6) 11.4 0.0114 P8 Cb GC TTCATATAGC 11.4 0.0114 P8 Cb GC GAAAACAAAA (8) 9.8 0.0098 P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC TTCATAAATA (4) 1.6 0.0016 P8 Cb GC TTGTGGTGAC (26) 1.6 0.0016 Cb medulloblastoma ATGTTAAAAA (6) 25.4 0.0254 Cb medulloblastoma GAAAACAAAA (8) 11.6 0.0116 Cb medulloblastoma GGGGGGGGGG (112) 6.9 0.0069 Cb medulloblastoma GTGGCGCACG (61) 6.9 0.0069 Cb medulloblastoma TTGTGGTGAC (26) 6.9 0.0069 Cb medulloblastoma TCAGGTCATT (5) 2.3 0.0023 Cb medulloblastoma TTCATAAATA (4) 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture ATGTTAAAAA (6) 14.8 0.0148 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture TTGTGGTGAC (26) 9.1 0.0091 P8 GC+1d culture GTGGCGCACG (61) 6.8 0.0068 P8 GC+1d culture TTCATATAGC 6.8 0.0068 P8 GC+1d culture GAAAACAAAA (8) 5.7 0.0057 P8 GC+1d culture GGGGGGGGGG (112) 2.3 0.0023 P8 GC+1d culture TTCATAAATA (4) 2.3 0.0023 P8 GC+1d culture AAACATCCCA (2) 1.1 0.0011 P8 GC+1d culture GTCTCTGAAA (6) 1.1 0.0011 P8 GC+1d culture TCAGGTCATT (5) 1.1 0.0011 P8 GC+1d culture TCTGTCTGTC (15) 1.1 0.0011 P8 GC+1d culture TGCTCTCAAC 1.1 0.0011 P8 GC+SHH+1d culture ATGTTAAAAA (6) 31.6 0.0316 P8 GC+SHH+1d culture TTCATATAGC 8.2 0.0082 P8 GC+SHH+1d culture GAAAACAAAA (8) 7 0.007 P8 GC+SHH+1d culture GGGGGGGGGG (112) 7 0.007 P8 GC+SHH+1d culture TTGTGGTGAC (26) 5.9 0.0059 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture TTCATAAATA (4) 3.5 0.0035 P8 GC+SHH+1d culture GTGGCGCACG (61) 2.3 0.0023 P8 GC+SHH+1d culture TGCTCTCAAC 2.3 0.0023 P8 GC+SHH+1d culture AAACATCCCA (2) 1.2 0.0012 3T3 fibroblasts GTGGCGCACG (61) 63.1 0.0631 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts CGAAGGAGAA 3.5 0.0035 3T3 fibroblasts GGGGGGGGGG (112) 3.5 0.0035 E15 cortex GTGGCGCACG (61) 113.8 0.1138 E15 cortex CGAAGGAGAA 4.9 0.0049 E15 cortex GGGGGGGGGG (112) 4.9 0.0049 E15 cortex GTCATAGCTG (590) 4.9 0.0049 E15 cortex TCAGGTCATT (5) 4.9 0.0049 E15 cortex TTCATATAGC 4.9 0.0049 E15 cortex TTGTGGTGAC (26) 4.9 0.0049 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex GTGGCGCACG (61) 18.2 0.0182 P1 cortex ATGTTAAAAA (6) 4.5 0.0045 P1 cortex TTCATAAATA (4) 4.5 0.0045 P1 cortex TTGTGGTGAC (26) 4.5 0.0045 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus GAAAACAAAA (8) 9.1 0.0091 Hypothalamus TTGTGGTGAC (26) 7.2 0.0072 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus ATGTTAAAAA (6) 3.6 0.0036 Hypothalamus GTGGCGCACG (61) 3.6 0.0036 Hypothalamus GGGGGGGGGG (112) 1.8 0.0018 Hypothalamus GTCTCTGAAA (6) 1.8 0.0018 Hypothalamus TCAGGTCATT (5) 1.8 0.0018 Hypothalamus TGCTCTCAAC 1.8 0.0018 Hypothalamus TTCATAAATA (4) 1.8 0.0018 Hypothalamus TTCATATAGC 1.8 0.0018 E12.5 retina ATGTTAAAAA (6) 13.1 0.0131 E12.5 retina GTGGCGCACG (61) 11.3 0.0113 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina TCAGGTCATT (5) 3.8 0.0038 E12.5 retina TTCATATAGC 3.8 0.0038 E12.5 retina TTGTGGTGAC (26) 3.8 0.0038 E12.5 retina AAACATCCCA (2) 1.9 0.0019 E12.5 retina GTCTCTGAAA (6) 1.9 0.0019 E12.5 retina TACAGTTCAA 1.9 0.0019 E14.5 retina GTGGCGCACG (61) 29.2 0.0292 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina GAAAACAAAA (8) 9.1 0.0091 E14.5 retina TTGTGGTGAC (26) 7.3 0.0073 E14.5 retina ATGTTAAAAA (6) 5.5 0.0055 E14.5 retina TCAGGTCATT (5) 5.5 0.0055 E14.5 retina TTCATATAGC 5.5 0.0055 E14.5 retina TGCTCTCAAC 3.6 0.0036 E14.5 retina TTCATAAATA (4) 1.8 0.0018 E14.5 retina TTTGGTCATT 1.8 0.0018 E16.5 retina GTGGCGCACG (61) 25.4 0.0254 E16.5 retina TTGTGGTGAC (26) 14.5 0.0145 E16.5 retina ATGTTAAAAA (6) 10.9 0.0109 E16.5 retina TTCATATAGC 10.9 0.0109 E16.5 retina TCAGGTCATT (5) 5.4 0.0054 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina GAAAACAAAA (8) 1.8 0.0018 E16.5 retina GTCTCTGAAA (6) 1.8 0.0018 E16.5 retina TGCTCTCAAC 1.8 0.0018 E16.5 retina TTCATAAATA (4) 1.8 0.0018 E18.5 retina ATGTTAAAAA (6) 60 0.06 E18.5 retina GAAAACAAAA (8) 10.9 0.0109 E18.5 retina GTGGCGCACG (61) 10.9 0.0109 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina TTGTGGTGAC (26) 9.1 0.0091 E18.5 retina TTCATATAGC 5.5 0.0055 E18.5 retina TGCTCTCAAC 1.8 0.0018 E18.5 retina TTCATAAATA (4) 1.8 0.0018 P0.5 retina GTGGCGCACG (61) 25.5 0.0255 P0.5 retina ATGTTAAAAA (6) 15.7 0.0157 P0.5 retina TTCATATAGC 9.8 0.0098 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina TTGTGGTGAC (26) 7.9 0.0079 P0.5 retina GAAAACAAAA (8) 5.9 0.0059 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina TCAGGTCATT (5) 3.9 0.0039 P0.5 retina CGAAGGAGAA 2 0.002 P0.5 retina GTCTCTGAAA (6) 2 0.002 P0.5 retina TCTGTCTGTC (15) 2 0.002 P0.5 retina TGCTCTCAAC 2 0.002 P0.5 retina TTCATAAATA (4) 2 0.002 P2.5 retina ATGTTAAAAA (6) 21.1 0.0211 P2.5 retina GAAAACAAAA (8) 17.6 0.0176 P2.5 retina GTGGCGCACG (61) 17.6 0.0176 P2.5 retina TTGTGGTGAC (26) 14.1 0.0141 P2.5 retina GGGGGGGGGG (112) 7 0.007 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina TCAGGTCATT (5) 1.8 0.0018 P2.5 retina TCTGTCTGTC (15) 1.8 0.0018 P4.5 retina TTGTGGTGAC (26) 19.8 0.0198 P4.5 retina GTGGCGCACG (61) 17.8 0.0178 P4.5 retina ATGTTAAAAA (6) 13.9 0.0139 P4.5 retina GAAAACAAAA (8) 11.9 0.0119 P4.5 retina GGGGGGGGGG (112) 9.9 0.0099 P4.5 retina TTCATAAATA (4) 9.9 0.0099 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina TTCATATAGC 7.9 0.0079 P4.5 retina GTCATAGCTG (590) 2 0.002 P4.5 retina TTTGGTCATT 2 0.002 P6.5 retina GTGGCGCACG (61) 38.3 0.0383 P6.5 retina ATGTTAAAAA (6) 13.3 0.0133 P6.5 retina TTGTGGTGAC (26) 11.7 0.0117 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina TTCATATAGC 6.7 0.0067 P6.5 retina GAAAACAAAA (8) 5 0.005 P6.5 retina TTCATAAATA (4) 5 0.005 P6.5 retina GGGGGGGGGG (112) 3.3 0.0033 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina AAACATCCCA (2) 1.7 0.0017 P6.5 retina TCTGTCTGTC (15) 1.7 0.0017 P6.5 retina TTTGGTCATT 1.7 0.0017 P10.5 crx- retina GTGGCGCACG (61) 13 0.013 P10.5 crx- retina TTGTGGTGAC (26) 9.3 0.0093 P10.5 crx- retina GAAAACAAAA (8) 3.7 0.0037 P10.5 crx- retina GTCTCTGAAA (6) 3.7 0.0037 P10.5 crx- retina TCAGGTCATT (5) 1.9 0.0019 P10.5 crx- retina TTCATAAATA (4) 1.9 0.0019 P10.5 crx- retina TTCATATAGC 1.9 0.0019 P10.5 crx+ retina GTGGCGCACG (61) 32.7 0.0327 P10.5 crx+ retina TTGTGGTGAC (26) 23.1 0.0231 P10.5 crx+ retina ATGTTAAAAA (6) 11.5 0.0115 P10.5 crx+ retina GGGGGGGGGG (112) 9.6 0.0096 P10.5 crx+ retina GAAAACAAAA (8) 7.7 0.0077 P10.5 crx+ retina TTCATAAATA (4) 3.8 0.0038 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 P10.5 crx+ retina TCTGTCTGTC (15) 1.9 0.0019 P10.5 crx+ retina TTCATATAGC 1.9 0.0019 Adult retinal GTGGCGCACG (61) 22.2 0.0222 Adult retinal TTGTGGTGAC (26) 7.4 0.0074 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal TTCATATAGC 5.6 0.0056 Adult retinal GGGGGGGGGG (112) 3.7 0.0037 Adult retinal TCAGGTCATT (5) 3.7 0.0037 Adult retinal ATGTTAAAAA (6) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal TCTGTCTGTC (15) 1.9 0.0019 Adult retinal TTCATAAATA (4) 1.9 0.0019 ONL GTGGCGCACG (61) 23 0.023 ONL TACAGTTCAA 9.6 0.0096 ONL ATGTTAAAAA (6) 5.7 0.0057 ONL GTCATAGCTG (590) 5.7 0.0057 ONL TTGTGGTGAC (26) 5.7 0.0057 ONL TTTTTTTTTT (433) 3.8 0.0038 ONL GAAAACAAAA (8) 1.9 0.0019 ONL GGGGGGGGGG (112) 1.9 0.0019 ONL TGCTCTCAAC 1.9 0.0019 ONL TTCATATAGC 1.9 0.0019