Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.246377	Tubb2	tubulin, beta 2	13	13 16.0 cM	22151
Gene Ontology	GTP binding | microtubule | microtubule-based process | structural constituent of cytoskeleton
Human Homolog	TUBB[tubulin, beta polypeptide]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 155 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGTATAAAAA (7) 27.7 0.0277 P8 Cb GC AACACCTTCA (7) 8.2 0.0082 P8 Cb GC AAGGAGGTGG (7) 4.9 0.0049 P8 Cb GC CCCTCACCCA (7) 4.9 0.0049 P8 Cb GC AATGACCTGG (5) 3.3 0.0033 P8 Cb GC AGTGGAGGGA (5) 3.3 0.0033 P8 Cb GC GACGAGATGG (9) 3.3 0.0033 P8 Cb GC TGTATAAAAT 3.3 0.0033 P8 Cb GC CAAACACCGT (6) 1.6 0.0016 P8 Cb GC GTCTTTCTAT (2) 1.6 0.0016 Cb medulloblastoma TGTATAAAAA (7) 50.9 0.0509 Cb medulloblastoma AGTGGAGGGA (5) 4.6 0.0046 Cb medulloblastoma CCCTCACCCA (7) 2.3 0.0023 Cb medulloblastoma CTGGAGGACA (4) 2.3 0.0023 Cb medulloblastoma GACGAGATGG (9) 2.3 0.0023 Cb medulloblastoma TGTATAAAAT 2.3 0.0023 P8 GC+1d culture AATGACCTGG (5) 89 0.089 P8 GC+1d culture TGTATAAAAA (7) 45.7 0.0457 P8 GC+1d culture TGTATAAAAT 6.8 0.0068 P8 GC+1d culture CCCTCACCCA (7) 5.7 0.0057 P8 GC+1d culture CAAACACCGT (6) 4.6 0.0046 P8 GC+1d culture AAGGAGGTGG (7) 2.3 0.0023 P8 GC+1d culture AGTGGAGGGA (5) 1.1 0.0011 P8 GC+1d culture CTGGAGGACA (4) 1.1 0.0011 P8 GC+1d culture CTTTTTTATT (4) 1.1 0.0011 P8 GC+1d culture TAACTTGGAT (2) 1.1 0.0011 P8 GC+SHH+1d culture TGTATAAAAA (7) 72.6 0.0726 P8 GC+SHH+1d culture AATGACCTGG (5) 31.6 0.0316 P8 GC+SHH+1d culture CCCTCACCCA (7) 10.5 0.0105 P8 GC+SHH+1d culture TGTATAAAAT 9.4 0.0094 P8 GC+SHH+1d culture CAAACACCGT (6) 4.7 0.0047 P8 GC+SHH+1d culture AGTGGAGGGA (5) 1.2 0.0012 P8 GC+SHH+1d culture GAGTCTGTGC (5) 1.2 0.0012 P8 GC+SHH+1d culture GCAGTGAACT (3) 1.2 0.0012 3T3 fibroblasts AGTGGAGGGA (5) 17.5 0.0175 3T3 fibroblasts CAAACACCGT (6) 10.5 0.0105 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts AATGACCTGG (5) 7 0.007 3T3 fibroblasts GTGGCCATTT 7 0.007 E15 cortex AATGACCTGG (5) 64.3 0.0643 E15 cortex CCCTCACCCA (7) 9.9 0.0099 E15 cortex GACGAGATGG (9) 9.9 0.0099 E15 cortex TGTATAAAAA (7) 9.9 0.0099 E15 cortex GTCATAGCTG (590) 4.9 0.0049 P1 cortex TGTATAAAAA (7) 145.4 0.1454 P1 cortex AATGACCTGG (5) 90.9 0.0909 P1 cortex TGTATAAAAT 18.2 0.0182 P1 cortex AAGGAGGTGG (7) 4.5 0.0045 P1 cortex AGTGGAGGGA (5) 4.5 0.0045 P1 cortex CCCTCACCCA (7) 4.5 0.0045 P1 cortex CCTTTGCTTC (5) 4.5 0.0045 P1 cortex CTTTTTTATT (4) 4.5 0.0045 Hypothalamus TGTATAAAAA (7) 77.9 0.0779 Hypothalamus TGTATAAAAT 10.9 0.0109 Hypothalamus CCTTTGCTTC (5) 5.4 0.0054 Hypothalamus AGTGGAGGGA (5) 3.6 0.0036 Hypothalamus CCCTCACCCA (7) 3.6 0.0036 Hypothalamus GTCTTTCTAT (2) 3.6 0.0036 Hypothalamus AATGACCTGG (5) 1.8 0.0018 Hypothalamus CTGGAGGACA (4) 1.8 0.0018 Hypothalamus GAGTCTGTGC (5) 1.8 0.0018 Hypothalamus GCAGTGAACT (3) 1.8 0.0018 Hypothalamus TGTTTAAAAA (13) 1.8 0.0018 E12.5 retina TGTATAAAAA (7) 26.3 0.0263 E12.5 retina AATGACCTGG (5) 13.1 0.0131 E12.5 retina AGTGGAGGGA (5) 5.6 0.0056 E12.5 retina AACACCTTCA (7) 1.9 0.0019 E14.5 retina TGTATAAAAA (7) 51 0.051 E14.5 retina AATGACCTGG (5) 5.5 0.0055 E14.5 retina CCCTCACCCA (7) 3.6 0.0036 E14.5 retina CTGGAGGACA (4) 3.6 0.0036 E14.5 retina GACGAGATGG (9) 3.6 0.0036 E14.5 retina TGTATAAAAT 3.6 0.0036 E14.5 retina TTGCTCTCCG (3) 3.6 0.0036 E14.5 retina AAGGAGGTGG (7) 1.8 0.0018 E14.5 retina AGTGGAGGGA (5) 1.8 0.0018 E14.5 retina AGTGGAGTGA (5) 1.8 0.0018 E16.5 retina TGTATAAAAA (7) 56.1 0.0561 E16.5 retina CCCTCACCCA (7) 10.9 0.0109 E16.5 retina CTGGAGGACA (4) 10.9 0.0109 E16.5 retina TGTATAAAAT 10.9 0.0109 E16.5 retina GACGAGATGG (9) 7.2 0.0072 E16.5 retina AATGACCTGG (5) 5.4 0.0054 E16.5 retina AAGGAGGTGG (7) 3.6 0.0036 E16.5 retina AGTGGAGGGA (5) 3.6 0.0036 E16.5 retina AACACCTTCA (7) 1.8 0.0018 E16.5 retina TAACTTGGAT (2) 1.8 0.0018 E16.5 retina TTGCTCTCCG (3) 1.8 0.0018 E18.5 retina TGTATAAAAA (7) 111 0.111 E18.5 retina TGTATAAAAT 9.1 0.0091 E18.5 retina AATGACCTGG (5) 7.3 0.0073 E18.5 retina CCCTCACCCA (7) 3.6 0.0036 E18.5 retina CTGGAGGACA (4) 3.6 0.0036 E18.5 retina GACGAGATGG (9) 3.6 0.0036 E18.5 retina AGTGGAGGGA (5) 1.8 0.0018 E18.5 retina TAACTTGGAT (2) 1.8 0.0018 P0.5 retina AATGACCTGG (5) 37.3 0.0373 P0.5 retina TGTATAAAAA (7) 25.5 0.0255 P0.5 retina AGTGGAGGGA (5) 15.7 0.0157 P0.5 retina AAGGAGGTGG (7) 7.9 0.0079 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina TGTATAAAAT 3.9 0.0039 P0.5 retina CCCTCACCCA (7) 2 0.002 P0.5 retina GTCTTTCTAT (2) 2 0.002 P2.5 retina TGTATAAAAA (7) 42.2 0.0422 P2.5 retina AATGACCTGG (5) 7 0.007 P2.5 retina GAGTCTGTGC (5) 3.5 0.0035 P2.5 retina TGTATAAAAT 3.5 0.0035 P2.5 retina CTGGAGGACA (4) 1.8 0.0018 P2.5 retina CTTTTTTATT (4) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P4.5 retina TGTATAAAAA (7) 69.3 0.0693 P4.5 retina AATGACCTGG (5) 9.9 0.0099 P4.5 retina TGTATAAAAT 9.9 0.0099 P4.5 retina AGTGGAGTGA (5) 2 0.002 P4.5 retina GAGTCTGTGC (5) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P4.5 retina TAACTTGGAT (2) 2 0.002 P4.5 retina TGTTTAAAAA (13) 2 0.002 P6.5 retina TGTATAAAAA (7) 76.7 0.0767 P6.5 retina AATGACCTGG (5) 8.3 0.0083 P6.5 retina AGTGGAGGGA (5) 5 0.005 P6.5 retina TGTTTAAAAA (13) 5 0.005 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina TGTATAAAAT 3.3 0.0033 P6.5 retina GACGAGATGG (9) 1.7 0.0017 P6.5 retina GAGTCTGTGC (5) 1.7 0.0017 P10.5 crx- retina TGTATAAAAA (7) 31.6 0.0316 P10.5 crx- retina AGTGGAGGGA (5) 11.1 0.0111 P10.5 crx- retina GAGTCTGTGC (5) 7.4 0.0074 P10.5 crx- retina CTGGAGGACA (4) 5.6 0.0056 P10.5 crx- retina CAAACACCGT (6) 3.7 0.0037 P10.5 crx- retina TGTATAAAAT 3.7 0.0037 P10.5 crx- retina AATGACCTGG (5) 1.9 0.0019 P10.5 crx- retina AGTGGAGTGA (5) 1.9 0.0019 P10.5 crx- retina GTCTTTCTAT (2) 1.9 0.0019 P10.5 crx+ retina TGTATAAAAA (7) 53.8 0.0538 P10.5 crx+ retina TGTATAAAAT 11.5 0.0115 P10.5 crx+ retina AGTGGAGGGA (5) 3.8 0.0038 P10.5 crx+ retina GAGTCTGTGC (5) 3.8 0.0038 P10.5 crx+ retina AACACCTTCA (7) 1.9 0.0019 P10.5 crx+ retina AATGACCTGG (5) 1.9 0.0019 P10.5 crx+ retina CTTTTTTATT (4) 1.9 0.0019 Adult retinal TGTATAAAAA (7) 20.4 0.0204 Adult retinal AGTGGAGGGA (5) 9.3 0.0093 Adult retinal CAAACACCGT (6) 7.4 0.0074 Adult retinal GAGTCTGTGC (5) 7.4 0.0074 Adult retinal AACACCTTCA (7) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal GTGGCCATTT 1.9 0.0019 ONL TGTATAAAAA (7) 26.8 0.0268 ONL GTCATAGCTG (590) 5.7 0.0057 ONL AGTGGAGGGA (5) 3.8 0.0038 ONL AAGGAGGTGG (7) 1.9 0.0019 ONL GCAGTGAACT (3) 1.9 0.0019