Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.246803	D030040M08Rik	RIKEN cDNA D030040M08 gene	8		319372
Mm.246803	Smarca5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	8		93762
Gene Ontology	chromatin assembly/disassembly | chromatin remodeling | nucleus | protein binding | transcription regulator activity
Human Homolog	SMARCA5[SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 40 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTTCACTCAC (3) 6.5 0.0065 P8 Cb GC ATTCCGAATT (107) 1.6 0.0016 P8 Cb GC TGTTTGCTTC (4) 1.6 0.0016 P8 GC+1d culture CTTCACTCAC (3) 3.4 0.0034 P8 GC+1d culture TGTTTGCTTC (4) 3.4 0.0034 P8 GC+1d culture CCACTCGTGG (3) 1.1 0.0011 P8 GC+SHH+1d culture CTTCACTCAC (3) 4.7 0.0047 P8 GC+SHH+1d culture TGTTTGCTTC (4) 4.7 0.0047 P8 GC+SHH+1d culture CCACTCGTGG (3) 1.2 0.0012 P8 GC+SHH+1d culture GCTCAGGAGG (10) 1.2 0.0012 3T3 fibroblasts CTTCACTCAC (3) 17.5 0.0175 3T3 fibroblasts CCACTCGTGG (3) 3.5 0.0035 P1 cortex CCACTCGTGG (3) 4.5 0.0045 P1 cortex TGTTTGCTTC (4) 4.5 0.0045 Hypothalamus CCACTCGTGG (3) 3.6 0.0036 Hypothalamus CTTCACTCAC (3) 3.6 0.0036 Hypothalamus TTGCTGTGAC (6) 3.6 0.0036 E12.5 retina CTTCACTCAC (3) 3.8 0.0038 E12.5 retina GCTCAGGAGG (10) 1.9 0.0019 E12.5 retina TGTTTGCTTC (4) 1.9 0.0019 E14.5 retina CTTCACTCAC (3) 1.8 0.0018 E16.5 retina CTTCACTCAC (3) 1.8 0.0018 E18.5 retina TGTTTGCTTC (4) 1.8 0.0018 P0.5 retina CTTCACTCAC (3) 3.9 0.0039 P2.5 retina CTTCACTCAC (3) 1.8 0.0018 P2.5 retina GCTCAGGAGG (10) 1.8 0.0018 P4.5 retina ATTCCGAATT (107) 2 0.002 P6.5 retina ATTCCGAATT (107) 3.3 0.0033 P6.5 retina CTTCACTCAC (3) 1.7 0.0017 P10.5 crx- retina CTTCACTCAC (3) 11.1 0.0111 P10.5 crx- retina CCACTCGTGG (3) 1.9 0.0019 P10.5 crx- retina TTGCTGTGAC (6) 1.9 0.0019 P10.5 crx+ retina CTTCACTCAC (3) 5.8 0.0058 P10.5 crx+ retina TGTTTGCTTC (4) 1.9 0.0019 P10.5 crx+ retina TTGCTGTGAC (6) 1.9 0.0019 Adult retinal TGTTTGCTTC (4) 5.6 0.0056 Adult retinal CTTCACTCAC (3) 1.9 0.0019 Adult retinal TTGCTGTGAC (6) 1.9 0.0019 ONL ATTCCGAATT (107) 3.8 0.0038 ONL CTTCACTCAC (3) 1.9 0.0019