Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.246990	A830080L01Rik	RIKEN cDNA A830080L01 gene	19		320200
Mm.246990	A830039H05Rik	RIKEN cDNA A830039H05 gene	19		320596
Mm.246990	Rtn3	reticulon 3	19		20168
Gene Ontology	endoplasmic reticulum | integral to membrane | molecular_function unknown
Human Homolog	RTN3[reticulon 3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 103 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AGAGGGTTTT (3) 19.6 0.0196 P8 Cb GC TGTTGGTTGA (3) 16.3 0.0163 P8 Cb GC GGAATCCTTG (3) 6.5 0.0065 P8 Cb GC GATCCCAGAC (3) 3.3 0.0033 P8 Cb GC AAAAGCCTTC (5) 1.6 0.0016 P8 Cb GC TAAAGCTCCA (3) 1.6 0.0016 P8 Cb GC TCACTAAGTT (5) 1.6 0.0016 P8 Cb GC TGGCTGATGA (4) 1.6 0.0016 Cb medulloblastoma AGAGGGTTTT (3) 27.7 0.0277 Cb medulloblastoma AAAAGCCTTC (5) 2.3 0.0023 Cb medulloblastoma GAAATCCAGT (3) 2.3 0.0023 Cb medulloblastoma GATCCCAGAC (3) 2.3 0.0023 Cb medulloblastoma TCACTAAGTT (5) 2.3 0.0023 Cb medulloblastoma TGTGGTGTGT (3) 2.3 0.0023 Cb medulloblastoma TGTTGGTTGA (3) 2.3 0.0023 P8 GC+1d culture TGTTGGTTGA (3) 17.1 0.0171 P8 GC+1d culture AGAGGGTTTT (3) 13.7 0.0137 P8 GC+1d culture GGAATCCTTG (3) 8 0.008 P8 GC+1d culture GTCTATGGGG (3) 2.3 0.0023 P8 GC+1d culture GATCCCAGAC (3) 1.1 0.0011 P8 GC+1d culture TGGCTGATGA (4) 1.1 0.0011 P8 GC+SHH+1d culture AGAGGGTTTT (3) 17.6 0.0176 P8 GC+SHH+1d culture TGTTGGTTGA (3) 15.2 0.0152 P8 GC+SHH+1d culture GGAATCCTTG (3) 10.5 0.0105 P8 GC+SHH+1d culture AAAAGCCTTC (5) 1.2 0.0012 P8 GC+SHH+1d culture GTCTATGGGG (3) 1.2 0.0012 3T3 fibroblasts TGTTGGTTGA (3) 10.5 0.0105 3T3 fibroblasts AGAGGGTTTT (3) 3.5 0.0035 3T3 fibroblasts CAGCTGCTTG (3) 3.5 0.0035 3T3 fibroblasts TGGCTGATGA (4) 3.5 0.0035 E15 cortex AGAGGGTTTT (3) 14.8 0.0148 E15 cortex GGAATCCTTG (3) 14.8 0.0148 P1 cortex AGAGGGTTTT (3) 9.1 0.0091 P1 cortex GGAATCCTTG (3) 9.1 0.0091 P1 cortex TACCATAAAA (4) 9.1 0.0091 P1 cortex TGTTGGTTGA (3) 9.1 0.0091 P1 cortex GATCCCAGAC (3) 4.5 0.0045 Hypothalamus AGAGGGTTTT (3) 16.3 0.0163 Hypothalamus GAAATCCAGT (3) 3.6 0.0036 Hypothalamus GGAATCCTTG (3) 1.8 0.0018 Hypothalamus GTGATGGGAG (3) 1.8 0.0018 Hypothalamus TGGCTGATGA (4) 1.8 0.0018 E12.5 retina GGAATCCTTG (3) 5.6 0.0056 E12.5 retina TGTTGGTTGA (3) 5.6 0.0056 E12.5 retina AGAGGGTTTT (3) 1.9 0.0019 E12.5 retina GTCTATGGGG (3) 1.9 0.0019 E14.5 retina GGAATCCTTG (3) 12.8 0.0128 E14.5 retina TGTTGGTTGA (3) 7.3 0.0073 E14.5 retina AGAGGGTTTT (3) 5.5 0.0055 E16.5 retina TGTTGGTTGA (3) 21.7 0.0217 E16.5 retina AGAGGGTTTT (3) 9.1 0.0091 E16.5 retina TACCATAAAA (4) 3.6 0.0036 E16.5 retina GATCCCAGAC (3) 1.8 0.0018 E16.5 retina GGAATCCTTG (3) 1.8 0.0018 E16.5 retina TAAAGCTCCA (3) 1.8 0.0018 E16.5 retina TCACTAAGTT (5) 1.8 0.0018 E18.5 retina AGAGGGTTTT (3) 5.5 0.0055 E18.5 retina TGTTGGTTGA (3) 5.5 0.0055 E18.5 retina GGAATCCTTG (3) 3.6 0.0036 P0.5 retina TGTTGGTTGA (3) 13.7 0.0137 P0.5 retina AGAGGGTTTT (3) 9.8 0.0098 P0.5 retina GGAATCCTTG (3) 7.9 0.0079 P0.5 retina GAAATCCAGT (3) 3.9 0.0039 P0.5 retina CAGCTGCTTG (3) 2 0.002 P0.5 retina GATCCCAGAC (3) 2 0.002 P0.5 retina TAAAGCTCCA (3) 2 0.002 P2.5 retina TGTTGGTTGA (3) 10.6 0.0106 P2.5 retina AGAGGGTTTT (3) 5.3 0.0053 P2.5 retina GGAATCCTTG (3) 5.3 0.0053 P4.5 retina AGAGGGTTTT (3) 11.9 0.0119 P4.5 retina TGTTGGTTGA (3) 11.9 0.0119 P4.5 retina GGAATCCTTG (3) 4 0.004 P4.5 retina CAGCTGCTTG (3) 2 0.002 P4.5 retina GTCTATGGGG (3) 2 0.002 P6.5 retina TGTTGGTTGA (3) 10 0.01 P6.5 retina AGAGGGTTTT (3) 5 0.005 P6.5 retina GATCCCAGAC (3) 1.7 0.0017 P6.5 retina GGAATCCTTG (3) 1.7 0.0017 P6.5 retina GTCTATGGGG (3) 1.7 0.0017 P6.5 retina TCACTAAGTT (5) 1.7 0.0017 P10.5 crx- retina AGAGGGTTTT (3) 29.7 0.0297 P10.5 crx- retina TGTTGGTTGA (3) 14.9 0.0149 P10.5 crx- retina GATCCCAGAC (3) 1.9 0.0019 P10.5 crx- retina GGAATCCTTG (3) 1.9 0.0019 P10.5 crx- retina TCACTAAGTT (5) 1.9 0.0019 P10.5 crx+ retina AGAGGGTTTT (3) 13.5 0.0135 P10.5 crx+ retina TGTTGGTTGA (3) 3.8 0.0038 P10.5 crx+ retina GATCCCAGAC (3) 1.9 0.0019 P10.5 crx+ retina GGAATCCTTG (3) 1.9 0.0019 P10.5 crx+ retina GTGATGGGAG (3) 1.9 0.0019 P10.5 crx+ retina TCACTAAGTT (5) 1.9 0.0019 Adult retinal AGAGGGTTTT (3) 13 0.013 Adult retinal TCACTAAGTT (5) 7.4 0.0074 Adult retinal TGTTGGTTGA (3) 5.6 0.0056 Adult retinal GTCTATGGGG (3) 3.7 0.0037 Adult retinal TGTGGTGTGT (3) 3.7 0.0037 Adult retinal GGAATCCTTG (3) 1.9 0.0019 Adult retinal GTGATGGGAG (3) 1.9 0.0019 Adult retinal TAAAGCTCCA (3) 1.9 0.0019 ONL AGAGGGTTTT (3) 15.3 0.0153 ONL TGTTGGTTGA (3) 11.5 0.0115 ONL GGAATCCTTG (3) 1.9 0.0019 ONL TCACTAAGTT (5) 1.9 0.0019