Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.247203	Pcdhgb1	protocadherin gamma subfamily B, 1	18		93699
Mm.247203	Pcdhgb2	protocadherin gamma subfamily B, 2	18		93700
Mm.247203	Pcdhgb5	protocadherin gamma subfamily B, 5	18		93702
Mm.247203	Pcdhgc3	protocadherin gamma subfamily C, 3	18		93706
Mm.247203	Pcdhga2	protocadherin gamma subfamily A, 2	18		93710
Mm.247203	Pcdhga6	protocadherin gamma subfamily A, 6	18		93714
Mm.247203	Pcdhga7	protocadherin gamma subfamily A, 7	18		93715
Mm.247203	Pcdhga8	protocadherin gamma subfamily A, 8	18		93716
Mm.247203	Pcdhga11	protocadherin gamma subfamily A, 11	18		93723
Mm.247203	Pcdhga12	protocadherin gamma subfamily A, 12	18		93724
Gene Ontology	calcium ion binding | calcium-dependent cell-cell adhesion | plasma membrane
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 113 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CACACACACA (106) 11.4 0.0114 P8 Cb GC TTGGAGATCT (11) 3.3 0.0033 P8 Cb GC ACCAAGGCAA (29) 1.6 0.0016 P8 Cb GC CATTTCTACA (11) 1.6 0.0016 P8 Cb GC GTTTGGTACC (11) 1.6 0.0016 Cb medulloblastoma CACACACACA (106) 32.4 0.0324 Cb medulloblastoma ACCAAGGCAA (29) 2.3 0.0023 Cb medulloblastoma CACAGCTCTG (24) 2.3 0.0023 Cb medulloblastoma CAGCTTCTGG (11) 2.3 0.0023 Cb medulloblastoma CTGGCTCTCT (11) 2.3 0.0023 Cb medulloblastoma GTTTGGTACC (11) 2.3 0.0023 P8 GC+1d culture TCTGGAGACA (11) 19.4 0.0194 P8 GC+1d culture CACACACACA (106) 6.8 0.0068 P8 GC+1d culture ACCAAGGCAA (29) 3.4 0.0034 P8 GC+1d culture CAGCTTCTGG (11) 1.1 0.0011 P8 GC+1d culture GTTTGGTACC (11) 1.1 0.0011 P8 GC+1d culture TTGATGTCCA (12) 1.1 0.0011 P8 GC+SHH+1d culture TCTGGAGACA (11) 11.7 0.0117 P8 GC+SHH+1d culture CACACACACA (106) 9.4 0.0094 P8 GC+SHH+1d culture TTGGAGATCT (11) 2.3 0.0023 P8 GC+SHH+1d culture AAGGAAAAAA (12) 1.2 0.0012 P8 GC+SHH+1d culture GTTTGGTACC (11) 1.2 0.0012 P8 GC+SHH+1d culture TGACATTAGT (13) 1.2 0.0012 3T3 fibroblasts CACACACACA (106) 17.5 0.0175 3T3 fibroblasts TCTGGAGACA (11) 10.5 0.0105 3T3 fibroblasts GTTTGGTACC (11) 3.5 0.0035 E15 cortex GTTTGGTACC (11) 9.9 0.0099 E15 cortex ACCAAGGCAA (29) 4.9 0.0049 E15 cortex ATTTAGACTC (12) 4.9 0.0049 E15 cortex CACACACACA (106) 4.9 0.0049 E15 cortex TCTGGAGACA (11) 4.9 0.0049 E15 cortex TTTTAAAACT (13) 4.9 0.0049 E15 cortex TTTTGGTGGT (12) 4.9 0.0049 P1 cortex CACACACACA (106) 27.3 0.0273 P1 cortex TCTGGAGACA (11) 22.7 0.0227 P1 cortex CACAGCTCTG (24) 18.2 0.0182 P1 cortex AAGGAAAAAA (12) 4.5 0.0045 Hypothalamus CACACACACA (106) 96 0.096 Hypothalamus AGATTTACAT (12) 1.8 0.0018 Hypothalamus ATTTAGACTC (12) 1.8 0.0018 Hypothalamus TCGTTGTGGG (14) 1.8 0.0018 Hypothalamus TCTGGAGACA (11) 1.8 0.0018 Hypothalamus TGACATTAGT (13) 1.8 0.0018 Hypothalamus TTTTAAAACT (13) 1.8 0.0018 E12.5 retina AAGGAAAAAA (12) 5.6 0.0056 E12.5 retina CACACACACA (106) 3.8 0.0038 E12.5 retina ATGGGGCTTT (13) 1.9 0.0019 E12.5 retina TTTTGGTGGT (12) 1.9 0.0019 E14.5 retina CACACACACA (106) 18.2 0.0182 E14.5 retina ACCAAGGCAA (29) 14.6 0.0146 E14.5 retina AAACCGGAAA (10) 1.8 0.0018 E16.5 retina CACACACACA (106) 12.7 0.0127 E16.5 retina GTTTGGTACC (11) 1.8 0.0018 E16.5 retina TCTGGAGACA (11) 1.8 0.0018 E16.5 retina TTTTAAAACT (13) 1.8 0.0018 E18.5 retina CACACACACA (106) 5.5 0.0055 E18.5 retina ACCAAGGCAA (29) 1.8 0.0018 E18.5 retina ATGGGGCTTT (13) 1.8 0.0018 E18.5 retina CAGCTTCTGG (11) 1.8 0.0018 E18.5 retina GTTTGGTACC (11) 1.8 0.0018 E18.5 retina TCGTTGTGGG (14) 1.8 0.0018 E18.5 retina TCTGGAGACA (11) 1.8 0.0018 E18.5 retina TTTTAAAACT (13) 1.8 0.0018 P0.5 retina TCTGGAGACA (11) 13.7 0.0137 P0.5 retina CACACACACA (106) 7.9 0.0079 P0.5 retina TTTTAAAACT (13) 5.9 0.0059 P0.5 retina ACCAAGGCAA (29) 3.9 0.0039 P0.5 retina AGATTTACAT (12) 2 0.002 P0.5 retina GTTTGGTACC (11) 2 0.002 P2.5 retina CACACACACA (106) 21.1 0.0211 P2.5 retina AAGGAAAAAA (12) 3.5 0.0035 P2.5 retina TCGTTGTGGG (14) 3.5 0.0035 P2.5 retina AAACCGGAAA (10) 1.8 0.0018 P2.5 retina ACCAAGGCAA (29) 1.8 0.0018 P2.5 retina CATTTCTACA (11) 1.8 0.0018 P2.5 retina TTGATGTCCA (12) 1.8 0.0018 P2.5 retina TTTTAAAACT (13) 1.8 0.0018 P4.5 retina CACACACACA (106) 7.9 0.0079 P4.5 retina TGACATTAGT (13) 5.9 0.0059 P4.5 retina TCTGGAGACA (11) 4 0.004 P6.5 retina CACACACACA (106) 8.3 0.0083 P6.5 retina TCTGGAGACA (11) 5 0.005 P6.5 retina AAACCGGAAA (10) 1.7 0.0017 P6.5 retina ACCAAGGCAA (29) 1.7 0.0017 P6.5 retina GTTTGGTACC (11) 1.7 0.0017 P6.5 retina TTAAAATACC (10) 1.7 0.0017 P6.5 retina TTGATGTCCA (12) 1.7 0.0017 P10.5 crx- retina CACACACACA (106) 5.6 0.0056 P10.5 crx- retina CTGGCTCTCT (11) 5.6 0.0056 P10.5 crx- retina TGACATTAGT (13) 3.7 0.0037 P10.5 crx- retina AGATTTACAT (12) 1.9 0.0019 P10.5 crx- retina ATGGGGCTTT (13) 1.9 0.0019 P10.5 crx- retina ATTTAGACTC (12) 1.9 0.0019 P10.5 crx- retina CATTTCTACA (11) 1.9 0.0019 P10.5 crx- retina GTTTGGTACC (11) 1.9 0.0019 P10.5 crx- retina TCTGGAGACA (11) 1.9 0.0019 P10.5 crx+ retina CACACACACA (106) 7.7 0.0077 P10.5 crx+ retina CTGGCTCTCT (11) 3.8 0.0038 P10.5 crx+ retina ACCAAGGCAA (29) 1.9 0.0019 P10.5 crx+ retina ATGGGGCTTT (13) 1.9 0.0019 P10.5 crx+ retina CATTTCTACA (11) 1.9 0.0019 Adult retinal CACACACACA (106) 16.7 0.0167 Adult retinal GTTTGGTACC (11) 3.7 0.0037 Adult retinal AAGGAAAAAA (12) 1.9 0.0019 Adult retinal ACCAAGGCAA (29) 1.9 0.0019 Adult retinal ATGGGGCTTT (13) 1.9 0.0019 Adult retinal CACAGCTCTG (24) 1.9 0.0019 Adult retinal CTGGCTCTCT (11) 1.9 0.0019 Adult retinal TCTGGAGACA (11) 1.9 0.0019 ONL CACACACACA (106) 21.1 0.0211 ONL ACCAAGGCAA (29) 9.6 0.0096 ONL AAGGAAAAAA (12) 5.7 0.0057 ONL TTAAAATACC (10) 3.8 0.0038