Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.248827	AI316784	expressed sequence AI316784	11		103672
Mm.248827	Canx	calnexin	11	11 30.0 cM	12330
Gene Ontology	calcium ion binding | calcium ion storage activity | endoplasmic reticulum | extracellular space | integral to membrane | integral to membrane | protein folding | sugar binding
Human Homolog	CANX[calnexin]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 103 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAACAGTTGT (2) 31 0.031 P8 Cb GC AAGCAACTAA (2) 3.3 0.0033 P8 Cb GC GACATTTTAC (2) 3.3 0.0033 P8 Cb GC CTGTGTGTCA (3) 1.6 0.0016 P8 Cb GC TGGAATGCAG (2) 1.6 0.0016 P8 Cb GC TGTCTGTCCT (4) 1.6 0.0016 Cb medulloblastoma TAACAGTTGT (2) 32.4 0.0324 Cb medulloblastoma CTGTGTGTCA (3) 2.3 0.0023 Cb medulloblastoma TGTCTGTCCT (4) 2.3 0.0023 P8 GC+1d culture TAACAGTTGT (2) 19.4 0.0194 P8 GC+1d culture AACAAATGAA (2) 6.8 0.0068 P8 GC+1d culture AAGCAACTAA (2) 5.7 0.0057 P8 GC+1d culture TGGAATGCAG (2) 5.7 0.0057 P8 GC+1d culture TGTCTGTCCT (4) 4.6 0.0046 P8 GC+1d culture TTTCTTCTTT (6) 3.4 0.0034 P8 GC+1d culture TTTTTTTCCC (3) 3.4 0.0034 P8 GC+1d culture GACATTTTAC (2) 2.3 0.0023 P8 GC+1d culture CCAGTAGTAC (2) 1.1 0.0011 P8 GC+1d culture CTGTGTGTCA (3) 1.1 0.0011 P8 GC+SHH+1d culture TAACAGTTGT (2) 38.6 0.0386 P8 GC+SHH+1d culture AACAAATGAA (2) 7 0.007 P8 GC+SHH+1d culture TGGAATGCAG (2) 5.9 0.0059 P8 GC+SHH+1d culture AAGCAACTAA (2) 3.5 0.0035 P8 GC+SHH+1d culture TGTCTGTCCT (4) 3.5 0.0035 P8 GC+SHH+1d culture CCAGTAGTAC (2) 2.3 0.0023 P8 GC+SHH+1d culture CTGTGTGTCA (3) 2.3 0.0023 P8 GC+SHH+1d culture GACATTTTAC (2) 2.3 0.0023 P8 GC+SHH+1d culture TTTCTTCTTT (6) 2.3 0.0023 3T3 fibroblasts TAACAGTTGT (2) 28 0.028 3T3 fibroblasts TGGAATGCAG (2) 10.5 0.0105 3T3 fibroblasts AAGCAACTAA (2) 7 0.007 3T3 fibroblasts CTGTGTGTCA (3) 3.5 0.0035 P1 cortex TAACAGTTGT (2) 9.1 0.0091 P1 cortex AACAAATGAA (2) 4.5 0.0045 Hypothalamus TAACAGTTGT (2) 19.9 0.0199 Hypothalamus AAGCAACTAA (2) 9.1 0.0091 Hypothalamus AACAAATGAA (2) 1.8 0.0018 Hypothalamus TTTCTTCTTT (6) 1.8 0.0018 E12.5 retina TAACAGTTGT (2) 56.3 0.0563 E12.5 retina AACAAATGAA (2) 11.3 0.0113 E12.5 retina AAGCAACTAA (2) 7.5 0.0075 E12.5 retina TGTCTGTCCT (4) 5.6 0.0056 E12.5 retina GACATTTTAC (2) 3.8 0.0038 E12.5 retina TGGAATGCAG (2) 1.9 0.0019 E12.5 retina TTTCTTCTTT (6) 1.9 0.0019 E12.5 retina TTTTTTTCCC (3) 1.9 0.0019 E14.5 retina TAACAGTTGT (2) 14.6 0.0146 E14.5 retina AACAAATGAA (2) 3.6 0.0036 E14.5 retina CTGTGTGTCA (3) 1.8 0.0018 E14.5 retina GACATTTTAC (2) 1.8 0.0018 E14.5 retina TGTCTGTCCT (4) 1.8 0.0018 E14.5 retina TTTTTTTCCC (3) 1.8 0.0018 E16.5 retina TAACAGTTGT (2) 19.9 0.0199 E16.5 retina TGGAATGCAG (2) 7.2 0.0072 E16.5 retina GACATTTTAC (2) 1.8 0.0018 E16.5 retina TGTCTGTCCT (4) 1.8 0.0018 E16.5 retina TTTCTTCTTT (6) 1.8 0.0018 E18.5 retina TAACAGTTGT (2) 41.8 0.0418 E18.5 retina AAGCAACTAA (2) 7.3 0.0073 E18.5 retina TTTTTTTCCC (3) 3.6 0.0036 E18.5 retina AACAAATGAA (2) 1.8 0.0018 E18.5 retina TGTCTGTCCT (4) 1.8 0.0018 P0.5 retina TAACAGTTGT (2) 23.6 0.0236 P0.5 retina TGGAATGCAG (2) 9.8 0.0098 P0.5 retina AACAAATGAA (2) 3.9 0.0039 P0.5 retina AAGCAACTAA (2) 3.9 0.0039 P0.5 retina CCAGTAGTAC (2) 2 0.002 P0.5 retina TTTTTTTCCC (3) 2 0.002 P2.5 retina TAACAGTTGT (2) 31.7 0.0317 P2.5 retina AAGCAACTAA (2) 8.8 0.0088 P2.5 retina TGGAATGCAG (2) 3.5 0.0035 P2.5 retina AACAAATGAA (2) 1.8 0.0018 P2.5 retina CTAAGAGGCC (2) 1.8 0.0018 P2.5 retina GACATTTTAC (2) 1.8 0.0018 P4.5 retina TAACAGTTGT (2) 29.7 0.0297 P4.5 retina AACAAATGAA (2) 4 0.004 P4.5 retina AAGCAACTAA (2) 4 0.004 P4.5 retina TGGAATGCAG (2) 4 0.004 P6.5 retina TAACAGTTGT (2) 16.7 0.0167 P6.5 retina AAGCAACTAA (2) 3.3 0.0033 P6.5 retina TTTTTTTCCC (3) 3.3 0.0033 P6.5 retina CTAAGAGGCC (2) 1.7 0.0017 P6.5 retina TGGAATGCAG (2) 1.7 0.0017 P10.5 crx- retina TAACAGTTGT (2) 44.6 0.0446 P10.5 crx- retina TGGAATGCAG (2) 16.7 0.0167 P10.5 crx- retina CCAGTAGTAC (2) 3.7 0.0037 P10.5 crx- retina TTTTTTTCCC (3) 3.7 0.0037 P10.5 crx- retina AACAAATGAA (2) 1.9 0.0019 P10.5 crx- retina TGTCTGTCCT (4) 1.9 0.0019 P10.5 crx+ retina TAACAGTTGT (2) 32.7 0.0327 P10.5 crx+ retina AAGCAACTAA (2) 7.7 0.0077 P10.5 crx+ retina TGTCTGTCCT (4) 3.8 0.0038 P10.5 crx+ retina CTGTGTGTCA (3) 1.9 0.0019 P10.5 crx+ retina TTTTTTTCCC (3) 1.9 0.0019 Adult retinal TAACAGTTGT (2) 16.7 0.0167 Adult retinal TGGAATGCAG (2) 7.4 0.0074 Adult retinal GACATTTTAC (2) 3.7 0.0037 Adult retinal TGTCTGTCCT (4) 1.9 0.0019 ONL TAACAGTTGT (2) 15.3 0.0153 ONL AACAAATGAA (2) 7.7 0.0077 ONL AAGCAACTAA (2) 7.7 0.0077 ONL TGTCTGTCCT (4) 3.8 0.0038 ONL TTTTTTTCCC (3) 3.8 0.0038