Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.249310
5430432P15Rik
RIKEN cDNA 5430432P15 gene
19
74493
Mm.249310
AL117938
expressed sequence AL117938
19
404585
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
Total 11 In Situ Hybridization Images
Images -- Click to Enlarge
SAGE Tags
Total 105 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TGGTTGCTGG (
369
)
68.5
0.0685
P8 Cb GC
CAAATAAACT
(
2
)
3.3
0.0033
P8 Cb GC
GAGCTGATGT (
8
)
3.3
0.0033
P8 Cb GC
TTGCAGCAAA (
8
)
3.3
0.0033
P8 Cb GC
AAATACCTTT
(
7
)
1.6
0.0016
Cb medulloblastoma
TGGTTGCTGG (
369
)
113.3
0.1133
Cb medulloblastoma
CAAATAAACT
(
2
)
18.5
0.0185
Cb medulloblastoma
TTGCAGCAAA (
8
)
6.9
0.0069
Cb medulloblastoma
CTTTTGTTTT (
7
)
4.6
0.0046
Cb medulloblastoma
GAGCTGATGT (
8
)
2.3
0.0023
Cb medulloblastoma
GTGCAGACCC
(
5
)
2.3
0.0023
Cb medulloblastoma
TTGCAGGAGA
(
3
)
2.3
0.0023
P8 GC+1d culture
TGGTTGCTGG (
369
)
57.1
0.0571
P8 GC+1d culture
CAAATAAACT
(
2
)
6.8
0.0068
P8 GC+1d culture
CCTCACTTAA
(
8
)
2.3
0.0023
P8 GC+1d culture
CTTTTGTTTT (
7
)
2.3
0.0023
P8 GC+1d culture
TTGCAGCAAA (
8
)
2.3
0.0023
P8 GC+SHH+1d culture
TGGTTGCTGG (
369
)
89
0.089
P8 GC+SHH+1d culture
CTTTTGTTTT (
7
)
9.4
0.0094
P8 GC+SHH+1d culture
CAAATAAACT
(
2
)
7
0.007
P8 GC+SHH+1d culture
CCTCACTTAA
(
8
)
4.7
0.0047
P8 GC+SHH+1d culture
TTGCAGCAAA (
8
)
2.3
0.0023
P8 GC+SHH+1d culture
GCGGTACACT
(
2
)
1.2
0.0012
P8 GC+SHH+1d culture
TTGCAGCAGA
(
5
)
1.2
0.0012
3T3 fibroblasts
TGGTTGCTGG (
369
)
220.8
0.2208
3T3 fibroblasts
GCGGTACACT
(
2
)
3.5
0.0035
3T3 fibroblasts
GTGCAGACCC
(
5
)
3.5
0.0035
E15 cortex
TGGTTGCTGG (
369
)
277.1
0.2771
E15 cortex
CTTTTGTTTT (
7
)
4.9
0.0049
P1 cortex
TGGTTGCTGG (
369
)
86.4
0.0864
P1 cortex
CAAATAAACT
(
2
)
9.1
0.0091
P1 cortex
CTTTTGTTTT (
7
)
9.1
0.0091
P1 cortex
AAATACCTTT
(
7
)
4.5
0.0045
P1 cortex
TTGCAGCAAA (
8
)
4.5
0.0045
Hypothalamus
TGGTTGCTGG (
369
)
349.6
0.3496
Hypothalamus
TTGCAGCAGA
(
5
)
9.1
0.0091
Hypothalamus
CAAATAAACT
(
2
)
5.4
0.0054
Hypothalamus
CTTTTGTTTT (
7
)
3.6
0.0036
Hypothalamus
CCTCACTTAA
(
8
)
1.8
0.0018
Hypothalamus
GAGCTGATGT (
8
)
1.8
0.0018
Hypothalamus
TTGCAGCAAA (
8
)
1.8
0.0018
Hypothalamus
TTGCAGGAGA
(
3
)
1.8
0.0018
E12.5 retina
TGGTTGCTGG (
369
)
157.7
0.1577
E12.5 retina
CCTCACTTAA
(
8
)
9.4
0.0094
E12.5 retina
CAAATAAACT
(
2
)
3.8
0.0038
E12.5 retina
TTGCAGCAAA (
8
)
3.8
0.0038
E12.5 retina
GCGGTACACT
(
2
)
1.9
0.0019
E14.5 retina
TGGTTGCTGG (
369
)
936.5
0.9365
E14.5 retina
CCTCACTTAA
(
8
)
10.9
0.0109
E14.5 retina
TTGCAGCAAA (
8
)
7.3
0.0073
E14.5 retina
CAAATAAACT
(
2
)
3.6
0.0036
E14.5 retina
CTTTTGTTTT (
7
)
1.8
0.0018
E16.5 retina
TGGTTGCTGG (
369
)
767.9
0.7679
E16.5 retina
CCTCACTTAA
(
8
)
3.6
0.0036
E16.5 retina
AAATACCTTT
(
7
)
1.8
0.0018
E16.5 retina
CAAATAAACT
(
2
)
1.8
0.0018
E18.5 retina
TGGTTGCTGG (
369
)
252.8
0.2528
E18.5 retina
CCTCACTTAA
(
8
)
7.3
0.0073
E18.5 retina
TTGCAGCAAA (
8
)
5.5
0.0055
E18.5 retina
CTTTTGTTTT (
7
)
1.8
0.0018
E18.5 retina
TTGCAGGAGA
(
3
)
1.8
0.0018
P0.5 retina
TGGTTGCTGG (
369
)
190.4
0.1904
P0.5 retina
CAAATAAACT
(
2
)
3.9
0.0039
P0.5 retina
GTGCAGACCC
(
5
)
3.9
0.0039
P0.5 retina
TTGCAGCAAA (
8
)
3.9
0.0039
P0.5 retina
CCTCACTTAA
(
8
)
2
0.002
P2.5 retina
TGGTTGCTGG (
369
)
165.4
0.1654
P2.5 retina
CCTCACTTAA
(
8
)
12.3
0.0123
P2.5 retina
TTGCAGCAAA (
8
)
3.5
0.0035
P2.5 retina
CAAATAAACT
(
2
)
1.8
0.0018
P2.5 retina
TTGCAGGAGA
(
3
)
1.8
0.0018
P4.5 retina
TGGTTGCTGG (
369
)
150.6
0.1506
P4.5 retina
CCTCACTTAA
(
8
)
21.8
0.0218
P4.5 retina
CTTTTGTTTT (
7
)
4
0.004
P4.5 retina
CAAATAAACT
(
2
)
2
0.002
P4.5 retina
TTGCAGCAAA (
8
)
2
0.002
P6.5 retina
TGGTTGCTGG (
369
)
156.7
0.1567
P6.5 retina
CCTCACTTAA
(
8
)
13.3
0.0133
P6.5 retina
CTTTTGTTTT (
7
)
6.7
0.0067
P6.5 retina
CAAATAAACT
(
2
)
3.3
0.0033
P6.5 retina
TTGCAGCAAA (
8
)
3.3
0.0033
P6.5 retina
AAATACCTTT
(
7
)
1.7
0.0017
P6.5 retina
GAGCTGATGT (
8
)
1.7
0.0017
P6.5 retina
TTGCAGCAGA
(
5
)
1.7
0.0017
P10.5 crx- retina
TGGTTGCTGG (
369
)
280.5
0.2805
P10.5 crx- retina
TTGCAGCAAA (
8
)
5.6
0.0056
P10.5 crx- retina
CTTTTGTTTT (
7
)
3.7
0.0037
P10.5 crx- retina
CAAATAAACT
(
2
)
1.9
0.0019
P10.5 crx- retina
CCTCACTTAA
(
8
)
1.9
0.0019
P10.5 crx+ retina
TGGTTGCTGG (
369
)
101.9
0.1019
P10.5 crx+ retina
TTGCAGCAAA (
8
)
17.3
0.0173
P10.5 crx+ retina
CAAATAAACT
(
2
)
3.8
0.0038
P10.5 crx+ retina
CCTCACTTAA
(
8
)
3.8
0.0038
P10.5 crx+ retina
CTTTTGTTTT (
7
)
3.8
0.0038
P10.5 crx+ retina
AAATACCTTT
(
7
)
1.9
0.0019
Adult retinal
TGGTTGCTGG (
369
)
214.8
0.2148
Adult retinal
TTGCAGCAAA (
8
)
11.1
0.0111
Adult retinal
CCTCACTTAA
(
8
)
3.7
0.0037
Adult retinal
CTTTTGTTTT (
7
)
1.9
0.0019
ONL
TGGTTGCTGG (
369
)
398.4
0.3984
ONL
TTGCAGCAAA (
8
)
21.1
0.0211
ONL
CCTCACTTAA
(
8
)
7.7
0.0077
ONL
AAATACCTTT
(
7
)
3.8
0.0038
ONL
CTTTTGTTTT (
7
)
3.8
0.0038
ONL
GCGGTACACT
(
2
)
1.9
0.0019
