Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.249934	Stat3	signal transducer and activator of transcription 3	11	11 60.5 cM	20848
Gene Ontology	acute-phase response | cytoplasm | cytoplasm | DNA binding | eye photoreceptor cell differentiation | intracellular signaling cascade | JAK-STAT cascade | nucleus | nucleus | plasma membrane | protein binding | protein dimerization activity | regulation of transcription from Pol II promoter | regulation of transcription, DNA-dependent | signal transducer activity | signal transduction | transcription factor activity | transcription from Pol II promoter | transcriptional activator activity
Human Homolog	STAT3[signal transducer and activator of transcription 3 (acute-phase response factor)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 106 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC GCATCCTGTT (3) 21.2 0.0212 P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC AAGACAAAAA (8) 3.3 0.0033 P8 Cb GC GGCACCAGGA (6) 1.6 0.0016 P8 Cb GC TGAGGAGCTG (10) 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma GCATCCTGTT (3) 48.6 0.0486 Cb medulloblastoma GGCACCAGGA (6) 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture GCATCCTGTT (3) 22.8 0.0228 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture GCTAGATTCA 4.6 0.0046 P8 GC+1d culture TTAATATATG (3) 3.4 0.0034 P8 GC+1d culture GGCACCAGGA (6) 2.3 0.0023 P8 GC+1d culture TGAGGAGCTG (10) 1.1 0.0011 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture GCATCCTGTT (3) 28.1 0.0281 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture GCTAGATTCA 2.3 0.0023 P8 GC+SHH+1d culture GGCACCAGGA (6) 1.2 0.0012 P8 GC+SHH+1d culture TTAATATATG (3) 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts GCTAGATTCA 10.5 0.0105 3T3 fibroblasts GCATCCTGTT (3) 7 0.007 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex GCATCCTGTT (3) 19.8 0.0198 E15 cortex GCATCCAGTG (2) 4.9 0.0049 E15 cortex GGGCAGGAGG (6) 4.9 0.0049 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex GCATCCTGTT (3) 31.8 0.0318 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus GCATCCTGTT (3) 25.4 0.0254 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus GCATCCAGTG (2) 1.8 0.0018 Hypothalamus TGAGGAGCTG (10) 1.8 0.0018 Hypothalamus TTAATATATG (3) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina GCATCCTGTT (3) 16.9 0.0169 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina AAGACAAAAA (8) 3.8 0.0038 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina GCATCCTGTT (3) 9.1 0.0091 E14.5 retina GCATCCAGTG (2) 3.6 0.0036 E14.5 retina AAGACAAAAA (8) 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina GCATCCTGTT (3) 7.2 0.0072 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina CTGACAAATA (2) 1.8 0.0018 E16.5 retina GCATCCAGTG (2) 1.8 0.0018 E16.5 retina TTAATATATG (3) 1.8 0.0018 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina GCATCCTGTT (3) 43.7 0.0437 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina AAGACAAAAA (8) 1.8 0.0018 E18.5 retina CTGACAAATA (2) 1.8 0.0018 E18.5 retina TGAGGAGCTG (10) 1.8 0.0018 E18.5 retina TTAATATATG (3) 1.8 0.0018 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina GCATCCTGTT (3) 7.9 0.0079 P0.5 retina GCTAGATTCA 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina GCATCCTGTT (3) 19.4 0.0194 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina AAGACAAAAA (8) 3.5 0.0035 P2.5 retina CTGACAAATA (2) 1.8 0.0018 P2.5 retina GGCACCAGGA (6) 1.8 0.0018 P2.5 retina TGAGGAGCTG (10) 1.8 0.0018 P2.5 retina TTAATATATG (3) 1.8 0.0018 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina GCATCCTGTT (3) 27.7 0.0277 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina GAGGGGGTGG (5) 2 0.002 P4.5 retina GGCACCAGGA (6) 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina GCATCCTGTT (3) 21.7 0.0217 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina AAGACAAAAA (8) 5 0.005 P6.5 retina CTGACAAATA (2) 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina GCATCCTGTT (3) 7.4 0.0074 P10.5 crx- retina GCATCCAGTG (2) 1.9 0.0019 P10.5 crx- retina GGCACCAGGA (6) 1.9 0.0019 P10.5 crx- retina TGAGGAGCTG (10) 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina GCATCCTGTT (3) 26.9 0.0269 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 P10.5 crx+ retina GGCACCAGGA (6) 1.9 0.0019 P10.5 crx+ retina TGAGGAGCTG (10) 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal GCATCCTGTT (3) 20.4 0.0204 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal TGAGGAGCTG (10) 3.7 0.0037 Adult retinal GAGGGGGTGG (5) 1.9 0.0019 Adult retinal GCTAGATTCA 1.9 0.0019 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL GCATCCTGTT (3) 19.2 0.0192 ONL GGCACCAGGA (6) 5.7 0.0057 ONL GAGGGGGTGG (5) 3.8 0.0038 ONL TTTTTTTTTT (433) 3.8 0.0038 ONL GGGCAGGAGG (6) 1.9 0.0019