Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.250641	2900003A17Rik	RIKEN cDNA 2900003A17 gene	12		72877
Mm.250641	C330002I19Rik	RIKEN cDNA C330002I19 gene	12		77480
Gene Ontology	DNA binding | integral to membrane | regulation of transcription, DNA-dependent | transcription factor activity
Human Homolog	KIDINS220[likely homolog of rat kinase D-interacting substance of 220 kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 190 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC CAAAAAAAAA (157) 47.3 0.0473 P8 Cb GC CCAAAAAAAA (35) 22.8 0.0228 P8 Cb GC GATAGATAAT (5) 21.2 0.0212 P8 Cb GC AAGAAAAAAA (27) 9.8 0.0098 P8 Cb GC AGAGGAGAGG (3) 1.6 0.0016 P8 Cb GC CAGCCACCCA (3) 1.6 0.0016 P8 Cb GC CGCCACCACA (11) 1.6 0.0016 P8 Cb GC CTGTTTTTAC (3) 1.6 0.0016 P8 Cb GC GTTTTAAAAA (22) 1.6 0.0016 P8 Cb GC TGATGGGTGC (4) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma CAAAAAAAAA (157) 92.5 0.0925 Cb medulloblastoma CCAAAAAAAA (35) 90.2 0.0902 Cb medulloblastoma GATAGATAAT (5) 41.6 0.0416 Cb medulloblastoma AAAATTTTCA (10) 13.9 0.0139 Cb medulloblastoma AAGAAAAAAA (27) 11.6 0.0116 Cb medulloblastoma CGCCACCACA (11) 6.9 0.0069 Cb medulloblastoma TGATGGGTGC (4) 6.9 0.0069 Cb medulloblastoma GTTTTAAAAA (22) 4.6 0.0046 Cb medulloblastoma AGAGGAGAGG (3) 2.3 0.0023 Cb medulloblastoma GGCACAGCAA (2) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture CCAAAAAAAA (35) 38.8 0.0388 P8 GC+1d culture CAAAAAAAAA (157) 37.7 0.0377 P8 GC+1d culture GATAGATAAT (5) 21.7 0.0217 P8 GC+1d culture AAGAAAAAAA (27) 4.6 0.0046 P8 GC+1d culture TGATGGGTGC (4) 4.6 0.0046 P8 GC+1d culture CGCCACCACA (11) 2.3 0.0023 P8 GC+1d culture GTTTTAAAAA (22) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture CAAAAAAAAA (157) 58.5 0.0585 P8 GC+SHH+1d culture CCAAAAAAAA (35) 39.8 0.0398 P8 GC+SHH+1d culture GATAGATAAT (5) 26.9 0.0269 P8 GC+SHH+1d culture GTTTTAAAAA (22) 8.2 0.0082 P8 GC+SHH+1d culture AAGAAAAAAA (27) 3.5 0.0035 P8 GC+SHH+1d culture CGCCACCACA (11) 2.3 0.0023 P8 GC+SHH+1d culture CCAAAAAAAC (6) 1.2 0.0012 P8 GC+SHH+1d culture CTGTTTTTAC (3) 1.2 0.0012 P8 GC+SHH+1d culture GGAGCCCTTT (2) 1.2 0.0012 P8 GC+SHH+1d culture TGATGGGTGC (4) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts CGCCACCACA (11) 10.5 0.0105 3T3 fibroblasts CAGCCACCCA (3) 3.5 0.0035 3T3 fibroblasts GATAGATAAT (5) 3.5 0.0035 3T3 fibroblasts TGATGGGTGC (4) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex CAAAAAAAAA (157) 34.6 0.0346 E15 cortex AAGAAAAAAA (27) 24.7 0.0247 E15 cortex CCAAAAAAAA (35) 9.9 0.0099 E15 cortex AGAGGAGAGG (3) 4.9 0.0049 E15 cortex CAGCCACCCA (3) 4.9 0.0049 E15 cortex CGCCACCACA (11) 4.9 0.0049 E15 cortex GATAGATAAT (5) 4.9 0.0049 E15 cortex GGGAATCTGC (4) 4.9 0.0049 E15 cortex GTTTTAAAAA (22) 4.9 0.0049 E15 cortex TGATGGGTGC (4) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex CCAAAAAAAA (35) 40.9 0.0409 P1 cortex CAAAAAAAAA (157) 22.7 0.0227 P1 cortex AAGAAAAAAA (27) 9.1 0.0091 P1 cortex GATAGATAAT (5) 9.1 0.0091 P1 cortex CGCCACCACA (11) 4.5 0.0045 P1 cortex CTGTTTTTAC (3) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus CAAAAAAAAA (157) 39.8 0.0398 Hypothalamus CCAAAAAAAA (35) 38 0.038 Hypothalamus GATAGATAAT (5) 19.9 0.0199 Hypothalamus AAAATTTTCA (10) 1.8 0.0018 Hypothalamus AAGAAAAAAA (27) 1.8 0.0018 Hypothalamus AGAGGAGAGG (3) 1.8 0.0018 Hypothalamus CAGCTCTCAG (3) 1.8 0.0018 Hypothalamus GGGAATCTGC (4) 1.8 0.0018 Hypothalamus TCCTGTAGCA (2) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina CAAAAAAAAA (157) 22.5 0.0225 E12.5 retina GATAGATAAT (5) 20.7 0.0207 E12.5 retina CCAAAAAAAA (35) 16.9 0.0169 E12.5 retina GTTTTAAAAA (22) 3.8 0.0038 E12.5 retina AAGAAAAAAA (27) 1.9 0.0019 E12.5 retina CCAAAAAAAC (6) 1.9 0.0019 E12.5 retina TGATGGGTGC (4) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina CCAAAAAAAA (35) 18.2 0.0182 E14.5 retina GATAGATAAT (5) 12.8 0.0128 E14.5 retina CAAAAAAAAA (157) 9.1 0.0091 E14.5 retina GTTTTAAAAA (22) 9.1 0.0091 E14.5 retina CAGCTCTCAG (3) 3.6 0.0036 E14.5 retina CGCCACCACA (11) 3.6 0.0036 E14.5 retina AAGAAAAAAA (27) 1.8 0.0018 E14.5 retina ATCTTTAACA (4) 1.8 0.0018 E14.5 retina CAGCCTCCTC (3) 1.8 0.0018 E14.5 retina TGATGGGTGC (4) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina GATAGATAAT (5) 27.2 0.0272 E16.5 retina CCAAAAAAAA (35) 16.3 0.0163 E16.5 retina CAAAAAAAAA (157) 9.1 0.0091 E16.5 retina GTTTTAAAAA (22) 7.2 0.0072 E16.5 retina AAAATTTTCA (10) 3.6 0.0036 E16.5 retina AAAATGCTCA (4) 1.8 0.0018 E16.5 retina AAGAAAAAAA (27) 1.8 0.0018 E16.5 retina CAGCCTCCTC (3) 1.8 0.0018 E16.5 retina CAGCTCTCAG (3) 1.8 0.0018 E16.5 retina CGCCACCACA (11) 1.8 0.0018 E16.5 retina CTGTTTTTAC (3) 1.8 0.0018 E16.5 retina GGAGCCCTTT (2) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina CAAAAAAAAA (157) 41.8 0.0418 E18.5 retina CCAAAAAAAA (35) 38.2 0.0382 E18.5 retina GATAGATAAT (5) 29.1 0.0291 E18.5 retina GTTTTAAAAA (22) 25.5 0.0255 E18.5 retina AAAATTTTCA (10) 7.3 0.0073 E18.5 retina AAGAAAAAAA (27) 5.5 0.0055 E18.5 retina TGATGGGTGC (4) 5.5 0.0055 E18.5 retina CGCCACCACA (11) 3.6 0.0036 E18.5 retina ATCTTTAACA (4) 1.8 0.0018 E18.5 retina GGCACAGCAA (2) 1.8 0.0018 P0.5 retina CAAAAAAAAA (157) 137.4 0.1374 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina CCAAAAAAAA (35) 29.4 0.0294 P0.5 retina CGCCACCACA (11) 7.9 0.0079 P0.5 retina GATAGATAAT (5) 3.9 0.0039 P0.5 retina TGATGGGTGC (4) 3.9 0.0039 P0.5 retina AAGAAAAAAA (27) 2 0.002 P0.5 retina GGAGCCCTTT (2) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina CAAAAAAAAA (157) 52.8 0.0528 P2.5 retina CCAAAAAAAA (35) 44 0.044 P2.5 retina GATAGATAAT (5) 17.6 0.0176 P2.5 retina CGCCACCACA (11) 12.3 0.0123 P2.5 retina AAGAAAAAAA (27) 5.3 0.0053 P2.5 retina TGATGGGTGC (4) 3.5 0.0035 P2.5 retina CTGTTTTTAC (3) 1.8 0.0018 P2.5 retina GTTTTAAAAA (22) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina CAAAAAAAAA (157) 41.6 0.0416 P4.5 retina CCAAAAAAAA (35) 39.6 0.0396 P4.5 retina GATAGATAAT (5) 13.9 0.0139 P4.5 retina TGATGGGTGC (4) 9.9 0.0099 P4.5 retina AAGAAAAAAA (27) 5.9 0.0059 P4.5 retina GTTTTAAAAA (22) 5.9 0.0059 P4.5 retina CGCCACCACA (11) 4 0.004 P4.5 retina CAGCTCTCAG (3) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina CCAAAAAAAA (35) 38.3 0.0383 P6.5 retina CAAAAAAAAA (157) 31.7 0.0317 P6.5 retina GATAGATAAT (5) 18.3 0.0183 P6.5 retina CGCCACCACA (11) 8.3 0.0083 P6.5 retina AAGAAAAAAA (27) 3.3 0.0033 P6.5 retina TGATGGGTGC (4) 3.3 0.0033 P6.5 retina GTTTTAAAAA (22) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina CCAAAAAAAA (35) 14.9 0.0149 P10.5 crx- retina CAAAAAAAAA (157) 13 0.013 P10.5 crx- retina GATAGATAAT (5) 13 0.013 P10.5 crx- retina AAAATTTTCA (10) 7.4 0.0074 P10.5 crx- retina CTGTTTTTAC (3) 5.6 0.0056 P10.5 crx- retina TGATGGGTAC (4) 5.6 0.0056 P10.5 crx- retina AAAATGCTCA (4) 1.9 0.0019 P10.5 crx- retina AAGAAAAAAA (27) 1.9 0.0019 P10.5 crx- retina ATCTTTAACA (4) 1.9 0.0019 P10.5 crx- retina CAGCTCTCAG (3) 1.9 0.0019 P10.5 crx- retina TGATGGGTGC (4) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina CCAAAAAAAA (35) 38.4 0.0384 P10.5 crx+ retina CAAAAAAAAA (157) 32.7 0.0327 P10.5 crx+ retina GATAGATAAT (5) 9.6 0.0096 P10.5 crx+ retina AAAATTTTCA (10) 3.8 0.0038 P10.5 crx+ retina AAAATGCTCA (4) 1.9 0.0019 P10.5 crx+ retina AAGAAAAAAA (27) 1.9 0.0019 P10.5 crx+ retina CCAAAAAAAC (6) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal CCAAAAAAAA (35) 35.2 0.0352 Adult retinal CAAAAAAAAA (157) 20.4 0.0204 Adult retinal GATAGATAAT (5) 11.1 0.0111 Adult retinal CGCCACCACA (11) 5.6 0.0056 Adult retinal TGATGGGTGC (4) 3.7 0.0037 Adult retinal AAAATTTTCA (10) 1.9 0.0019 Adult retinal AAGAAAAAAA (27) 1.9 0.0019 Adult retinal CAGCCTCCTC (3) 1.9 0.0019 Adult retinal CTGTTTTTAC (3) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL GATAGATAAT (5) 24.9 0.0249 ONL CAAAAAAAAA (157) 17.2 0.0172 ONL CCAAAAAAAA (35) 7.7 0.0077 ONL AAAATTTTCA (10) 3.8 0.0038 ONL AAGAAAAAAA (27) 3.8 0.0038 ONL GTTTTAAAAA (22) 3.8 0.0038 ONL CGCCACCACA (11) 1.9 0.0019 ONL GGGAATCTGC (4) 1.9 0.0019