Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.251255	Ddx1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	12		104721
Gene Ontology	ATP binding | ATP dependent helicase activity | ATPase activity | cell growth and/or maintenance | helicase activity | hydrolase activity | nucleic acid binding | regulation of translational initiation | ribosome biogenesis | RNA binding | RNA helicase activity | spermatogenesis | spliceosome assembly
Human Homolog	DDX1[DEAD (Asp-Glu-Ala-Asp) box polypeptide 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 173 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC GAAAAAAAAA (204) 45.7 0.0457 P8 Cb GC TCAGGAAACA (3) 13.1 0.0131 P8 Cb GC ACAAAAAAAA (31) 6.5 0.0065 P8 Cb GC AACAAAAAAA (18) 4.9 0.0049 P8 Cb GC TGTATGTCTT (4) 3.3 0.0033 P8 Cb GC AAAATAAACT (4) 1.6 0.0016 P8 Cb GC GCTGCAGAAA 1.6 0.0016 P8 Cb GC TAGACAGAAG (3) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma GAAAAAAAAA (204) 173.4 0.1734 Cb medulloblastoma ACAAAAAAAA (31) 34.7 0.0347 Cb medulloblastoma TGTATGTCTT (4) 13.9 0.0139 Cb medulloblastoma AACAAAAAAA (18) 9.2 0.0092 Cb medulloblastoma TCAGGAAACA (3) 6.9 0.0069 Cb medulloblastoma AAAAAAAACA (13) 2.3 0.0023 Cb medulloblastoma CGAGAGTTAG 2.3 0.0023 Cb medulloblastoma GCTGCAGAAA 2.3 0.0023 Cb medulloblastoma TGGAGTTCTC (4) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture GAAAAAAAAA (204) 41.1 0.0411 P8 GC+1d culture TCAGGAAACA (3) 10.3 0.0103 P8 GC+1d culture ACAAAAAAAA (31) 5.7 0.0057 P8 GC+1d culture AACAAAAAAA (18) 3.4 0.0034 P8 GC+1d culture AAAATAAACT (4) 1.1 0.0011 P8 GC+1d culture CAGCTTCCTT (3) 1.1 0.0011 P8 GC+1d culture GCTGCAGAAA 1.1 0.0011 P8 GC+1d culture TAGACAGAAG (3) 1.1 0.0011 P8 GC+1d culture TGGAGTTCTC (4) 1.1 0.0011 P8 GC+1d culture TGTATGTCTT (4) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture GAAAAAAAAA (204) 77.3 0.0773 P8 GC+SHH+1d culture TCAGGAAACA (3) 15.2 0.0152 P8 GC+SHH+1d culture ACAAAAAAAA (31) 14.1 0.0141 P8 GC+SHH+1d culture AACAAAAAAA (18) 5.9 0.0059 P8 GC+SHH+1d culture TGTATGTCTT (4) 3.5 0.0035 P8 GC+SHH+1d culture TAGACAGAGG (2) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts CAGCTTCCTT (3) 3.5 0.0035 3T3 fibroblasts TGTATGTCTT (4) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex GAAAAAAAAA (204) 54.4 0.0544 E15 cortex CAGCTTCCTT (3) 9.9 0.0099 E15 cortex AACAAAAAAA (18) 4.9 0.0049 E15 cortex ACAAAAAAAA (31) 4.9 0.0049 E15 cortex TGTATGTCTT (4) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex GAAAAAAAAA (204) 45.5 0.0455 P1 cortex TGTATGTCTT (4) 45.5 0.0455 P1 cortex TCAGGAAACA (3) 9.1 0.0091 P1 cortex ACAAAAAAAA (31) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus GAAAAAAAAA (204) 67 0.067 Hypothalamus TGTATGTCTT (4) 14.5 0.0145 Hypothalamus TCAGGAAACA (3) 12.7 0.0127 Hypothalamus ACAAAAAAAA (31) 10.9 0.0109 Hypothalamus TGGAGTTCTC (4) 5.4 0.0054 Hypothalamus AAAATAAACT (4) 1.8 0.0018 Hypothalamus AACAAAAAAA (18) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina GAAAAAAAAA (204) 46.9 0.0469 E12.5 retina TCAGGAAACA (3) 24.4 0.0244 E12.5 retina AACAAAAAAA (18) 3.8 0.0038 E12.5 retina TAGACAGAAG (3) 3.8 0.0038 E12.5 retina AAAATAAACT (4) 1.9 0.0019 E12.5 retina AAGGCTTGTG (2) 1.9 0.0019 E12.5 retina ACAAAAAAAA (31) 1.9 0.0019 E12.5 retina CAGCTTCCTT (3) 1.9 0.0019 E12.5 retina TGGGAAAATG (6) 1.9 0.0019 E12.5 retina TGTATGTCTT (4) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina GAAAAAAAAA (204) 34.6 0.0346 E14.5 retina TCAGGAAACA (3) 21.9 0.0219 E14.5 retina TGTATGTCTT (4) 10.9 0.0109 E14.5 retina AAAATAAACT (4) 7.3 0.0073 E14.5 retina ACAAAAAAAA (31) 5.5 0.0055 E14.5 retina AACAAAAAAA (18) 1.8 0.0018 E14.5 retina AAGGCTTGTG (2) 1.8 0.0018 E14.5 retina TAGACAGAAG (3) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina TGTATGTCTT (4) 38 0.038 E16.5 retina GAAAAAAAAA (204) 23.5 0.0235 E16.5 retina TCAGGAAACA (3) 16.3 0.0163 E16.5 retina AAAATAAACT (4) 3.6 0.0036 E16.5 retina AAAAAAAACA (13) 1.8 0.0018 E16.5 retina ACAAAAAAAA (31) 1.8 0.0018 E16.5 retina CAGCTTCCTT (3) 1.8 0.0018 E16.5 retina CGAGAGTTAG 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina GAAAAAAAAA (204) 65.5 0.0655 E18.5 retina TGTATGTCTT (4) 32.7 0.0327 E18.5 retina ACAAAAAAAA (31) 14.6 0.0146 E18.5 retina TCAGGAAACA (3) 10.9 0.0109 E18.5 retina AAAATAAACT (4) 5.5 0.0055 E18.5 retina AACAAAAAAA (18) 5.5 0.0055 E18.5 retina AAAAAAAACA (13) 1.8 0.0018 E18.5 retina CAGCTTCCTT (3) 1.8 0.0018 E18.5 retina TAGACAGAAG (3) 1.8 0.0018 E18.5 retina TATGTAGCAA (2) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina GAAAAAAAAA (204) 35.3 0.0353 P0.5 retina TGTATGTCTT (4) 11.8 0.0118 P0.5 retina ACAAAAAAAA (31) 5.9 0.0059 P0.5 retina TAGACAGAAG (3) 3.9 0.0039 P0.5 retina AAAATAAACT (4) 2 0.002 P0.5 retina AACAAAAAAA (18) 2 0.002 P0.5 retina TCAGGAAACA (3) 2 0.002 P0.5 retina TGGGAAAATG (6) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina GAAAAAAAAA (204) 86.2 0.0862 P2.5 retina TGTATGTCTT (4) 35.2 0.0352 P2.5 retina TCAGGAAACA (3) 17.6 0.0176 P2.5 retina AAAATAAACT (4) 5.3 0.0053 P2.5 retina ACAAAAAAAA (31) 5.3 0.0053 P2.5 retina TAGACAGAAG (3) 5.3 0.0053 P2.5 retina AACAAAAAAA (18) 3.5 0.0035 P2.5 retina CAGCTTCCTT (3) 1.8 0.0018 P2.5 retina GCTGCAGAAA 1.8 0.0018 P2.5 retina TATGTAGCAA (2) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina GAAAAAAAAA (204) 51.5 0.0515 P4.5 retina TGTATGTCTT (4) 37.6 0.0376 P4.5 retina TCAGGAAACA (3) 13.9 0.0139 P4.5 retina ACAAAAAAAA (31) 5.9 0.0059 P4.5 retina AAAATAAACT (4) 4 0.004 P4.5 retina AACAAAAAAA (18) 4 0.004 P4.5 retina CAGCTTCCTT (3) 4 0.004 P4.5 retina AAAAAAAACA (13) 2 0.002 P4.5 retina TAGACAGAAG (3) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina TGTATGTCTT (4) 46.7 0.0467 P6.5 retina GAAAAAAAAA (204) 40 0.04 P6.5 retina TCAGGAAACA (3) 18.3 0.0183 P6.5 retina AAAATAAACT (4) 1.7 0.0017 P6.5 retina ACAAAAAAAA (31) 1.7 0.0017 P6.5 retina TAGACAGAAG (3) 1.7 0.0017 P10.5 crx- retina TGTATGTCTT (4) 55.7 0.0557 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina GAAAAAAAAA (204) 16.7 0.0167 P10.5 crx- retina TCAGGAAACA (3) 11.1 0.0111 P10.5 crx- retina AACAAAAAAA (18) 3.7 0.0037 P10.5 crx- retina TATGTAGCAA (2) 3.7 0.0037 P10.5 crx- retina AAGGCTTGTG (2) 1.9 0.0019 P10.5 crx- retina ACAAAAAAAA (31) 1.9 0.0019 P10.5 crx- retina CAGCTTCCTT (3) 1.9 0.0019 P10.5 crx- retina CGAGAGTTAG 1.9 0.0019 P10.5 crx- retina TAGACAGAGG (2) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina GAAAAAAAAA (204) 42.3 0.0423 P10.5 crx+ retina TGTATGTCTT (4) 32.7 0.0327 P10.5 crx+ retina ACAAAAAAAA (31) 11.5 0.0115 P10.5 crx+ retina TCAGGAAACA (3) 11.5 0.0115 P10.5 crx+ retina AAAAAAAACA (13) 1.9 0.0019 P10.5 crx+ retina AACAAAAAAA (18) 1.9 0.0019 P10.5 crx+ retina CAGCTTCCTT (3) 1.9 0.0019 P10.5 crx+ retina TAGACAGAAG (3) 1.9 0.0019 P10.5 crx+ retina TAGACAGAGG (2) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal TGTATGTCTT (4) 37 0.037 Adult retinal GAAAAAAAAA (204) 16.7 0.0167 Adult retinal TCAGGAAACA (3) 7.4 0.0074 Adult retinal CAGCTTCCTT (3) 1.9 0.0019 Adult retinal TGGAGTTCTC (4) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL GAAAAAAAAA (204) 24.9 0.0249 ONL TGTATGTCTT (4) 17.2 0.0172 ONL TCAGGAAACA (3) 15.3 0.0153 ONL ACAAAAAAAA (31) 5.7 0.0057 ONL CAGCTTCCTT (3) 3.8 0.0038 ONL AAAAAAAACA (13) 1.9 0.0019 ONL AAAATAAACT (4) 1.9 0.0019 ONL TAGACAGAAG (3) 1.9 0.0019 ONL TGGGAAAATG (6) 1.9 0.0019