Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.251255	Ddx1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	12		104721
Gene Ontology	ATP binding | ATP dependent helicase activity | ATPase activity | cell growth and/or maintenance | helicase activity | hydrolase activity | nucleic acid binding | regulation of translational initiation | ribosome biogenesis | RNA binding | RNA helicase activity | spermatogenesis | spliceosome assembly
Human Homolog	DDX1[DEAD (Asp-Glu-Ala-Asp) box polypeptide 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 51 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TCAGGAAACA (2) 13.1 0.0131 P8 Cb GC TGTATGTCTT (2) 3.3 0.0033 P8 Cb GC GCTGCAGAAA 1.6 0.0016 Cb medulloblastoma TGTATGTCTT (2) 13.9 0.0139 Cb medulloblastoma TCAGGAAACA (2) 6.9 0.0069 Cb medulloblastoma CGAGAGTTAG 2.3 0.0023 Cb medulloblastoma GCTGCAGAAA 2.3 0.0023 P8 GC+1d culture TCAGGAAACA (2) 10.3 0.0103 P8 GC+1d culture GCTGCAGAAA 1.1 0.0011 P8 GC+1d culture TGTATGTCTT (2) 1.1 0.0011 P8 GC+SHH+1d culture TCAGGAAACA (2) 15.2 0.0152 P8 GC+SHH+1d culture TGTATGTCTT (2) 3.5 0.0035 P8 GC+SHH+1d culture TAGACAGAGG (2) 1.2 0.0012 3T3 fibroblasts TGTATGTCTT (2) 3.5 0.0035 E15 cortex TGTATGTCTT (2) 4.9 0.0049 P1 cortex TGTATGTCTT (2) 45.5 0.0455 P1 cortex TCAGGAAACA (2) 9.1 0.0091 Hypothalamus TGTATGTCTT (2) 14.5 0.0145 Hypothalamus TCAGGAAACA (2) 12.7 0.0127 E12.5 retina TCAGGAAACA (2) 24.4 0.0244 E12.5 retina TGTATGTCTT (2) 1.9 0.0019 E14.5 retina TCAGGAAACA (2) 21.9 0.0219 E14.5 retina TGTATGTCTT (2) 10.9 0.0109 E16.5 retina TGTATGTCTT (2) 38 0.038 E16.5 retina TCAGGAAACA (2) 16.3 0.0163 E16.5 retina CGAGAGTTAG 1.8 0.0018 E18.5 retina TGTATGTCTT (2) 32.7 0.0327 E18.5 retina TCAGGAAACA (2) 10.9 0.0109 E18.5 retina TATGTAGCAA 1.8 0.0018 P0.5 retina TGTATGTCTT (2) 11.8 0.0118 P0.5 retina TCAGGAAACA (2) 2 0.002 P2.5 retina TGTATGTCTT (2) 35.2 0.0352 P2.5 retina TCAGGAAACA (2) 17.6 0.0176 P2.5 retina GCTGCAGAAA 1.8 0.0018 P2.5 retina TATGTAGCAA 1.8 0.0018 P4.5 retina TGTATGTCTT (2) 37.6 0.0376 P4.5 retina TCAGGAAACA (2) 13.9 0.0139 P6.5 retina TGTATGTCTT (2) 46.7 0.0467 P6.5 retina TCAGGAAACA (2) 18.3 0.0183 P10.5 crx- retina TGTATGTCTT (2) 55.7 0.0557 P10.5 crx- retina TCAGGAAACA (2) 11.1 0.0111 P10.5 crx- retina TATGTAGCAA 3.7 0.0037 P10.5 crx- retina CGAGAGTTAG 1.9 0.0019 P10.5 crx- retina TAGACAGAGG (2) 1.9 0.0019 P10.5 crx+ retina TGTATGTCTT (2) 32.7 0.0327 P10.5 crx+ retina TCAGGAAACA (2) 11.5 0.0115 P10.5 crx+ retina TAGACAGAGG (2) 1.9 0.0019 Adult retinal TGTATGTCTT (2) 37 0.037 Adult retinal TCAGGAAACA (2) 7.4 0.0074 ONL TGTATGTCTT (2) 17.2 0.0172 ONL TCAGGAAACA (2) 15.3 0.0153