Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.252171	Snx2	sorting nexin 2	18		67804
Gene Ontology	intracellular protein transport | intracellular signaling cascade | protein transport | protein transporter activity | transport
Human Homolog	SNX2[sorting nexin 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 62 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTCAGCTCGA (6) 93 0.093 P8 Cb GC ATTCTGGCAG (2) 3.3 0.0033 P8 Cb GC TGGGTTTTTT (7) 3.3 0.0033 Cb medulloblastoma TTCAGCTCGA (6) 18.5 0.0185 Cb medulloblastoma TGGGTTTTTT (7) 11.6 0.0116 Cb medulloblastoma ATTCTGGCAG (2) 4.6 0.0046 Cb medulloblastoma ACATTCTGCA (2) 2.3 0.0023 P8 GC+1d culture TTCAGCTCGA (6) 20.5 0.0205 P8 GC+1d culture TGGGTTTTTT (7) 6.8 0.0068 P8 GC+1d culture ACATTCTGCA (2) 2.3 0.0023 P8 GC+1d culture ATTCTGGCAG (2) 2.3 0.0023 P8 GC+SHH+1d culture TTCAGCTCGA (6) 46.8 0.0468 P8 GC+SHH+1d culture ACATTCTGCA (2) 5.9 0.0059 P8 GC+SHH+1d culture TGGGTTTTTT (7) 2.3 0.0023 P8 GC+SHH+1d culture CAGCTTGTAA (6) 1.2 0.0012 3T3 fibroblasts TTCAGCTCGA (6) 87.6 0.0876 3T3 fibroblasts ATTCTGGCAG (2) 7 0.007 E15 cortex TTCAGCTCGA (6) 108.9 0.1089 E15 cortex ATTCTGGCAG (2) 4.9 0.0049 P1 cortex TTCAGCTCGA (6) 45.5 0.0455 Hypothalamus TTCAGCTCGA (6) 9.1 0.0091 Hypothalamus ACATTCTGCA (2) 1.8 0.0018 Hypothalamus ATTCTGGCAG (2) 1.8 0.0018 Hypothalamus CAGCTTGTAA (6) 1.8 0.0018 E12.5 retina TTCAGCTCGA (6) 18.8 0.0188 E12.5 retina CAGCTTGTAA (6) 1.9 0.0019 E14.5 retina TTCAGCTCGA (6) 7.3 0.0073 E14.5 retina ACATTCTGCA (2) 1.8 0.0018 E16.5 retina TTCAGCTCGA (6) 14.5 0.0145 E16.5 retina ACATTCTGCA (2) 1.8 0.0018 E16.5 retina ATTCTGGCAG (2) 1.8 0.0018 E16.5 retina CAGCTTGTAA (6) 1.8 0.0018 E18.5 retina TTCAGCTCGA (6) 23.6 0.0236 E18.5 retina TGGGTTTTTT (7) 3.6 0.0036 E18.5 retina ATTCTGGCAG (2) 1.8 0.0018 E18.5 retina GGGGGAAGGG (8) 1.8 0.0018 P0.5 retina TTCAGCTCGA (6) 92.2 0.0922 P0.5 retina ACATTCTGCA (2) 3.9 0.0039 P0.5 retina ATTCTGGCAG (2) 2 0.002 P2.5 retina TTCAGCTCGA (6) 29.9 0.0299 P2.5 retina TGGGTTTTTT (7) 8.8 0.0088 P2.5 retina ACATTCTGCA (2) 1.8 0.0018 P2.5 retina ATTCTGGCAG (2) 1.8 0.0018 P4.5 retina TTCAGCTCGA (6) 29.7 0.0297 P4.5 retina TGGGTTTTTT (7) 4 0.004 P6.5 retina TTCAGCTCGA (6) 26.7 0.0267 P6.5 retina CAGCTTGTAA (6) 1.7 0.0017 P10.5 crx- retina TTCAGCTCGA (6) 63.2 0.0632 P10.5 crx- retina ATTCTGGCAG (2) 5.6 0.0056 P10.5 crx- retina ACATTCTGCA (2) 3.7 0.0037 P10.5 crx- retina GGGGGAAGGG (8) 1.9 0.0019 P10.5 crx- retina TGGGTTTTTT (7) 1.9 0.0019 P10.5 crx+ retina TTCAGCTCGA (6) 19.2 0.0192 P10.5 crx+ retina GGGGGAAGGG (8) 3.8 0.0038 P10.5 crx+ retina ACATTCTGCA (2) 1.9 0.0019 P10.5 crx+ retina TGGGTTTTTT (7) 1.9 0.0019 Adult retinal TTCAGCTCGA (6) 51.8 0.0518 Adult retinal ATTCTGGCAG (2) 1.9 0.0019 Adult retinal GGGGGAAGGG (8) 1.9 0.0019 Adult retinal TGGGTTTTTT (7) 1.9 0.0019 ONL TTCAGCTCGA (6) 24.9 0.0249 ONL ACATTCTGCA (2) 1.9 0.0019