Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.2537
Ncoa2
nuclear receptor coactivator 2
1
1 1.0 cM
17978
Mm.2537
2300004M11Rik
RIKEN cDNA 2300004M11 gene
1
70084
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 95 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GAAAAAAAAA (
204
)
45.7
0.0457
P8 Cb GC
CCAGGAATTC (
3
)
17.9
0.0179
P8 Cb GC
GCAAAAAAAA (
50
)
14.7
0.0147
P8 Cb GC
AATCCTGTAT
(
2
)
3.3
0.0033
P8 Cb GC
AAGTTGCATT
(
4
)
1.6
0.0016
P8 Cb GC
AATCAAAAAG (
4
)
1.6
0.0016
P8 Cb GC
AGCAATCCCC (
3
)
1.6
0.0016
Cb medulloblastoma
GAAAAAAAAA (
204
)
173.4
0.1734
Cb medulloblastoma
GCAAAAAAAA (
50
)
60.1
0.0601
Cb medulloblastoma
CCAGGAATTC (
3
)
16.2
0.0162
Cb medulloblastoma
AAGTTGCATT
(
4
)
4.6
0.0046
P8 GC+1d culture
GAAAAAAAAA (
204
)
41.1
0.0411
P8 GC+1d culture
CCAGGAATTC (
3
)
18.3
0.0183
P8 GC+1d culture
GCAAAAAAAA (
50
)
12.6
0.0126
P8 GC+1d culture
AAGTTGCATT
(
4
)
5.7
0.0057
P8 GC+1d culture
AATCAAAAAG (
4
)
4.6
0.0046
P8 GC+1d culture
AGCAATCCCC (
3
)
1.1
0.0011
P8 GC+1d culture
AGGAGAGTCT
(
2
)
1.1
0.0011
P8 GC+1d culture
GTCTCAAAAA
(
2
)
1.1
0.0011
P8 GC+SHH+1d culture
GAAAAAAAAA (
204
)
77.3
0.0773
P8 GC+SHH+1d culture
GCAAAAAAAA (
50
)
29.3
0.0293
P8 GC+SHH+1d culture
CCAGGAATTC (
3
)
19.9
0.0199
P8 GC+SHH+1d culture
AAGTTGCATT
(
4
)
3.5
0.0035
P8 GC+SHH+1d culture
AGGAGAGTCT
(
2
)
1.2
0.0012
3T3 fibroblasts
AGCAATCCCC (
3
)
3.5
0.0035
3T3 fibroblasts
GCAAAAAAAA (
50
)
3.5
0.0035
E15 cortex
GAAAAAAAAA (
204
)
54.4
0.0544
E15 cortex
CCAGGAATTC (
3
)
9.9
0.0099
E15 cortex
GCAAAAAAAA (
50
)
9.9
0.0099
P1 cortex
GAAAAAAAAA (
204
)
45.5
0.0455
P1 cortex
CCAGGAATTC (
3
)
9.1
0.0091
P1 cortex
AATCAAAAAG (
4
)
4.5
0.0045
P1 cortex
GCAAAAAAAA (
50
)
4.5
0.0045
Hypothalamus
GAAAAAAAAA (
204
)
67
0.067
Hypothalamus
GCAAAAAAAA (
50
)
19.9
0.0199
Hypothalamus
CCAGGAATTC (
3
)
5.4
0.0054
Hypothalamus
AAGTTGCATT
(
4
)
1.8
0.0018
E12.5 retina
GAAAAAAAAA (
204
)
46.9
0.0469
E12.5 retina
CCAGGAATTC (
3
)
16.9
0.0169
E12.5 retina
GCAAAAAAAA (
50
)
9.4
0.0094
E12.5 retina
AAGTTGCATT
(
4
)
3.8
0.0038
E12.5 retina
AATCAAAAAG (
4
)
1.9
0.0019
E14.5 retina
GAAAAAAAAA (
204
)
34.6
0.0346
E14.5 retina
CCAGGAATTC (
3
)
23.7
0.0237
E14.5 retina
GCAAAAAAAA (
50
)
12.8
0.0128
E14.5 retina
GTCTCAAAAA
(
2
)
1.8
0.0018
E16.5 retina
GAAAAAAAAA (
204
)
23.5
0.0235
E16.5 retina
CCAGGAATTC (
3
)
14.5
0.0145
E16.5 retina
GCAAAAAAAA (
50
)
10.9
0.0109
E18.5 retina
GAAAAAAAAA (
204
)
65.5
0.0655
E18.5 retina
CCAGGAATTC (
3
)
29.1
0.0291
E18.5 retina
GCAAAAAAAA (
50
)
25.5
0.0255
E18.5 retina
AAGTTGCATT
(
4
)
1.8
0.0018
P0.5 retina
GAAAAAAAAA (
204
)
35.3
0.0353
P0.5 retina
CCAGGAATTC (
3
)
25.5
0.0255
P0.5 retina
GCAAAAAAAA (
50
)
17.7
0.0177
P0.5 retina
AAGTTGCATT
(
4
)
9.8
0.0098
P0.5 retina
AATCAAAAAG (
4
)
2
0.002
P2.5 retina
GAAAAAAAAA (
204
)
86.2
0.0862
P2.5 retina
GCAAAAAAAA (
50
)
22.9
0.0229
P2.5 retina
CCAGGAATTC (
3
)
19.4
0.0194
P2.5 retina
AATCAAAAAG (
4
)
8.8
0.0088
P2.5 retina
AAGTTGCATT
(
4
)
1.8
0.0018
P4.5 retina
GAAAAAAAAA (
204
)
51.5
0.0515
P4.5 retina
GCAAAAAAAA (
50
)
25.8
0.0258
P4.5 retina
CCAGGAATTC (
3
)
17.8
0.0178
P4.5 retina
AATCAAAAAG (
4
)
4
0.004
P4.5 retina
AAGTTGCATT
(
4
)
2
0.002
P4.5 retina
AATCCTGTAT
(
2
)
2
0.002
P6.5 retina
GAAAAAAAAA (
204
)
40
0.04
P6.5 retina
CCAGGAATTC (
3
)
13.3
0.0133
P6.5 retina
GCAAAAAAAA (
50
)
11.7
0.0117
P6.5 retina
AAGTTGCATT
(
4
)
5
0.005
P10.5 crx- retina
GAAAAAAAAA (
204
)
16.7
0.0167
P10.5 crx- retina
CCAGGAATTC (
3
)
7.4
0.0074
P10.5 crx- retina
AAGTTGCATT
(
4
)
5.6
0.0056
P10.5 crx- retina
GCAAAAAAAA (
50
)
5.6
0.0056
P10.5 crx- retina
AATCCTGTAT
(
2
)
1.9
0.0019
P10.5 crx- retina
AGGAGAGTCT
(
2
)
1.9
0.0019
P10.5 crx+ retina
GAAAAAAAAA (
204
)
42.3
0.0423
P10.5 crx+ retina
CCAGGAATTC (
3
)
15.4
0.0154
P10.5 crx+ retina
AAGTTGCATT
(
4
)
1.9
0.0019
P10.5 crx+ retina
AATCAAAAAG (
4
)
1.9
0.0019
P10.5 crx+ retina
GCAAAAAAAA (
50
)
1.9
0.0019
Adult retinal
GAAAAAAAAA (
204
)
16.7
0.0167
Adult retinal
GCAAAAAAAA (
50
)
11.1
0.0111
Adult retinal
CCAGGAATTC (
3
)
5.6
0.0056
Adult retinal
AAGTTGCATT
(
4
)
1.9
0.0019
Adult retinal
AGCAATCCCC (
3
)
1.9
0.0019
ONL
GAAAAAAAAA (
204
)
24.9
0.0249
ONL
AAGTTGCATT
(
4
)
5.7
0.0057
ONL
AATCAAAAAG (
4
)
5.7
0.0057
ONL
CCAGGAATTC (
3
)
3.8
0.0038
ONL
GCAAAAAAAA (
50
)
1.9
0.0019
ONL
GTCTCAAAAA
(
2
)
1.9
0.0019
