Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.254588	Cltc	clathrin, heavy polypeptide (Hc)	11		67300
Gene Ontology	membrane coat | mitochondrion
Human Homolog	CLTC[clathrin, heavy polypeptide (Hc)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 223 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC TAAAAAAAAA (196) 47.3 0.0473 P8 Cb GC TGGAGGAGCT (4) 8.2 0.0082 P8 Cb GC GGGTTTCCAG (3) 4.9 0.0049 P8 Cb GC TTTGTGGTCA (5) 4.9 0.0049 P8 Cb GC ACAGTACAAC (2) 3.3 0.0033 P8 Cb GC ATTCCACGCG 3.3 0.0033 P8 Cb GC CAAGACTGTC (3) 3.3 0.0033 P8 Cb GC TGGGTTTTTT (7) 3.3 0.0033 P8 Cb GC AAGTGAGCAA 1.6 0.0016 P8 Cb GC GGAATGTTAC (3) 1.6 0.0016 P8 Cb GC TAGAATTGCA 1.6 0.0016 P8 Cb GC TCCTCCAAGA (4) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma TAAAAAAAAA (196) 106.4 0.1064 Cb medulloblastoma TAGAATTGCA 13.9 0.0139 Cb medulloblastoma TGGGTTTTTT (7) 11.6 0.0116 Cb medulloblastoma TGGGCTTTTT 6.9 0.0069 Cb medulloblastoma ACAGTACAAC (2) 4.6 0.0046 Cb medulloblastoma AGGGCTGTGA (2) 4.6 0.0046 Cb medulloblastoma TTTGTGGTCA (5) 4.6 0.0046 Cb medulloblastoma AAGTGAGCAA 2.3 0.0023 Cb medulloblastoma ATTCCACGCG 2.3 0.0023 Cb medulloblastoma GGGTTTCCAG (3) 2.3 0.0023 Cb medulloblastoma TTAAATAATG (2) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture TAAAAAAAAA (196) 66.2 0.0662 P8 GC+1d culture GGGTTTCCAG (3) 12.6 0.0126 P8 GC+1d culture ATTCCACGCG 11.4 0.0114 P8 GC+1d culture TGGAGGAGCT (4) 10.3 0.0103 P8 GC+1d culture TGGGTTTTTT (7) 6.8 0.0068 P8 GC+1d culture AAGTGAGCAA 4.6 0.0046 P8 GC+1d culture TCCTCCAAGA (4) 4.6 0.0046 P8 GC+1d culture ACAGTACAAC (2) 3.4 0.0034 P8 GC+1d culture CAAGACTGTC (3) 3.4 0.0034 P8 GC+1d culture AGGGCTGTGA (2) 1.1 0.0011 P8 GC+1d culture CGGATCAGTC 1.1 0.0011 P8 GC+1d culture TAGAATTGCA 1.1 0.0011 P8 GC+1d culture TTAAATAATG (2) 1.1 0.0011 P8 GC+1d culture TTTGTGGTCA (5) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture TAAAAAAAAA (196) 93.7 0.0937 P8 GC+SHH+1d culture ATTCCACGCG 14.1 0.0141 P8 GC+SHH+1d culture AAGTGAGCAA 9.4 0.0094 P8 GC+SHH+1d culture TGGAGGAGCT (4) 5.9 0.0059 P8 GC+SHH+1d culture GGGTTTCCAG (3) 4.7 0.0047 P8 GC+SHH+1d culture ACAGTACAAC (2) 3.5 0.0035 P8 GC+SHH+1d culture TCCTCCAAGA (4) 3.5 0.0035 P8 GC+SHH+1d culture TAGAATTGCA 2.3 0.0023 P8 GC+SHH+1d culture TGGGTTTTTT (7) 2.3 0.0023 P8 GC+SHH+1d culture AGGGCTGTGA (2) 1.2 0.0012 P8 GC+SHH+1d culture CAAGACTGTC (3) 1.2 0.0012 P8 GC+SHH+1d culture CGGATCAGTC 1.2 0.0012 P8 GC+SHH+1d culture GGAATGTTAC (3) 1.2 0.0012 P8 GC+SHH+1d culture TTAAATAATG (2) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts ATTCCACGCG 21 0.021 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts AAGTGAGCAA 7 0.007 3T3 fibroblasts GGGTTTCCAG (3) 7 0.007 3T3 fibroblasts TAAAAAAAAA (196) 7 0.007 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex TAAAAAAAAA (196) 9.9 0.0099 E15 cortex ATTCCACGCG 4.9 0.0049 E15 cortex CGGATCAGTC 4.9 0.0049 E15 cortex GGGTTTCCAG (3) 4.9 0.0049 E15 cortex GTCATAGCTG (590) 4.9 0.0049 E15 cortex TAGAATTGCA 4.9 0.0049 E15 cortex TGGAGGAGCT (4) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex TAAAAAAAAA (196) 50 0.05 P1 cortex ATTCCACGCG 13.6 0.0136 P1 cortex GGGTTTCCAG (3) 4.5 0.0045 P1 cortex TAGAATTGCA 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus TAAAAAAAAA (196) 32.6 0.0326 Hypothalamus CAAGACTGTC (3) 10.9 0.0109 Hypothalamus AAGTGAGCAA 5.4 0.0054 Hypothalamus AGTTTTTACT 3.6 0.0036 Hypothalamus TAGAATTGCA 3.6 0.0036 Hypothalamus TGGAGGAGCT (4) 3.6 0.0036 Hypothalamus GGGAATGTTC (2) 1.8 0.0018 Hypothalamus GGGTTTCCAG (3) 1.8 0.0018 Hypothalamus TTTGTGGTCA (5) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina TAAAAAAAAA (196) 24.4 0.0244 E12.5 retina GGGTTTCCAG (3) 9.4 0.0094 E12.5 retina AAGTGAGCAA 7.5 0.0075 E12.5 retina ATTCCACGCG 7.5 0.0075 E12.5 retina TAGAATTGCA 3.8 0.0038 E12.5 retina AAGCCAGCTG (5) 1.9 0.0019 E12.5 retina AGGGCTGTGA (2) 1.9 0.0019 E12.5 retina GGAATGTTAC (3) 1.9 0.0019 E12.5 retina TCCTCCAAGA (4) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina TAAAAAAAAA (196) 41.9 0.0419 E14.5 retina ACAGTACAAC (2) 7.3 0.0073 E14.5 retina GGGTTTCCAG (3) 5.5 0.0055 E14.5 retina AAGTGAGCAA 3.6 0.0036 E14.5 retina TAGAATTGCA 3.6 0.0036 E14.5 retina ATTCCACGCG 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina TAAAAAAAAA (196) 23.5 0.0235 E16.5 retina GGGTTTCCAG (3) 10.9 0.0109 E16.5 retina ACAGTACAAC (2) 3.6 0.0036 E16.5 retina ATTCCACGCG 3.6 0.0036 E16.5 retina AACAGAATCA (4) 1.8 0.0018 E16.5 retina AAGCCAGCTG (5) 1.8 0.0018 E16.5 retina AAGTGAGCAA 1.8 0.0018 E16.5 retina AGGGCTGTGA (2) 1.8 0.0018 E16.5 retina CAAGACTGTC (3) 1.8 0.0018 E16.5 retina TAGAATTGCA 1.8 0.0018 E16.5 retina TGGAGGAGCT (4) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina TAAAAAAAAA (196) 107.3 0.1073 E18.5 retina ACAGTACAAC (2) 7.3 0.0073 E18.5 retina AAGTGAGCAA 5.5 0.0055 E18.5 retina GGGTTTCCAG (3) 3.6 0.0036 E18.5 retina TGGGTTTTTT (7) 3.6 0.0036 E18.5 retina AACAGAATCA (4) 1.8 0.0018 E18.5 retina ATTCCACGCG 1.8 0.0018 E18.5 retina CAAGACTGTC (3) 1.8 0.0018 E18.5 retina TAGAATTGCA 1.8 0.0018 E18.5 retina TGGAGGAGCT (4) 1.8 0.0018 E18.5 retina TTAAATAATG (2) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina TAAAAAAAAA (196) 37.3 0.0373 P0.5 retina TGGAGGAGCT (4) 7.9 0.0079 P0.5 retina ATTCCACGCG 5.9 0.0059 P0.5 retina GGGTTTCCAG (3) 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina AACAGAATCA (4) 2 0.002 P0.5 retina AAGCCAGCTG (5) 2 0.002 P0.5 retina AGCAAAAGCA (5) 2 0.002 P0.5 retina AGTTTTTACT 2 0.002 P0.5 retina CAAGACTGTC (3) 2 0.002 P0.5 retina TAGAATTGCA 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina TAAAAAAAAA (196) 72.2 0.0722 P2.5 retina AACAGAATCA (4) 8.8 0.0088 P2.5 retina AAGTGAGCAA 8.8 0.0088 P2.5 retina TGGGTTTTTT (7) 8.8 0.0088 P2.5 retina ATTCCACGCG 5.3 0.0053 P2.5 retina CAAGACTGTC (3) 5.3 0.0053 P2.5 retina GGGTTTCCAG (3) 5.3 0.0053 P2.5 retina TTAAATAATG (2) 5.3 0.0053 P2.5 retina CGGATCAGTC 3.5 0.0035 P2.5 retina GGAATGTTAC (3) 3.5 0.0035 P2.5 retina TGGAGGAGCT (4) 3.5 0.0035 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina TCCTCCAAGA (4) 1.8 0.0018 P2.5 retina TGGGCTTTTT 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina TAAAAAAAAA (196) 122.8 0.1228 P4.5 retina GGGTTTCCAG (3) 9.9 0.0099 P4.5 retina AACAGAATCA (4) 7.9 0.0079 P4.5 retina ATTCCACGCG 5.9 0.0059 P4.5 retina TGGAGGAGCT (4) 4 0.004 P4.5 retina TGGGTTTTTT (7) 4 0.004 P4.5 retina AAGTGAGCAA 2 0.002 P4.5 retina AGCAAAAGCA (5) 2 0.002 P4.5 retina GGAATGTTAC (3) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P4.5 retina TAGAATTGCA 2 0.002 P4.5 retina TTAAATAATG (2) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina TAAAAAAAAA (196) 63.4 0.0634 P6.5 retina ATTCCACGCG 10 0.01 P6.5 retina TAGAATTGCA 10 0.01 P6.5 retina AAGTGAGCAA 6.7 0.0067 P6.5 retina GGGTTTCCAG (3) 6.7 0.0067 P6.5 retina TGGAGGAGCT (4) 6.7 0.0067 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina AACAGAATCA (4) 1.7 0.0017 P6.5 retina ACAGTACAAC (2) 1.7 0.0017 P6.5 retina CAAGACTGTC (3) 1.7 0.0017 P6.5 retina TCCTCCAAGA (4) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina ATTCCACGCG 24.2 0.0242 P10.5 crx- retina TAAAAAAAAA (196) 9.3 0.0093 P10.5 crx- retina AAGTGAGCAA 5.6 0.0056 P10.5 crx- retina TGGAGGAGCT (4) 5.6 0.0056 P10.5 crx- retina GGAATGTTAC (3) 3.7 0.0037 P10.5 crx- retina TAGAATTGCA 3.7 0.0037 P10.5 crx- retina TTAAATAATG (2) 3.7 0.0037 P10.5 crx- retina TTTGTGGTCA (5) 3.7 0.0037 P10.5 crx- retina AACAGAATCA (4) 1.9 0.0019 P10.5 crx- retina ACAGTACAAC (2) 1.9 0.0019 P10.5 crx- retina GGGAATGTTC (2) 1.9 0.0019 P10.5 crx- retina GGGTTTCCAG (3) 1.9 0.0019 P10.5 crx- retina TGGGTTTTTT (7) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina TAAAAAAAAA (196) 25 0.025 P10.5 crx+ retina ATTCCACGCG 19.2 0.0192 P10.5 crx+ retina AAGTGAGCAA 15.4 0.0154 P10.5 crx+ retina CAAGACTGTC (3) 9.6 0.0096 P10.5 crx+ retina TTAAATAATG (2) 7.7 0.0077 P10.5 crx+ retina AACAGAATCA (4) 3.8 0.0038 P10.5 crx+ retina CGGATCAGTC 1.9 0.0019 P10.5 crx+ retina GGAATGTTAC (3) 1.9 0.0019 P10.5 crx+ retina GGGTTTCCAG (3) 1.9 0.0019 P10.5 crx+ retina TAGAATTGCA 1.9 0.0019 P10.5 crx+ retina TGGAGGAGCT (4) 1.9 0.0019 P10.5 crx+ retina TGGGTTTTTT (7) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal TAAAAAAAAA (196) 18.5 0.0185 Adult retinal ATTCCACGCG 11.1 0.0111 Adult retinal TGGAGGAGCT (4) 5.6 0.0056 Adult retinal GGAATGTTAC (3) 3.7 0.0037 Adult retinal TAGAATTGCA 3.7 0.0037 Adult retinal AACAGAATCA (4) 1.9 0.0019 Adult retinal AGCAAAAGCA (5) 1.9 0.0019 Adult retinal CGGATCAGTC 1.9 0.0019 Adult retinal GGGTTTCCAG (3) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal TGGGTTTTTT (7) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL TAAAAAAAAA (196) 28.7 0.0287 ONL AAGTGAGCAA 11.5 0.0115 ONL GTCATAGCTG (590) 5.7 0.0057 ONL TAGAATTGCA 5.7 0.0057 ONL ATTCCACGCG 3.8 0.0038 ONL AACAGAATCA (4) 1.9 0.0019