Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.2580	Sdc1	syndecan 1	12	12 1.0 cM	20969
Gene Ontology	cytoskeletal protein binding | extracellular space | integral to membrane | membrane
Human Homolog	SDC1[syndecan 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 76 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AGTGGTCAAG (2) 13.1 0.0131 P8 Cb GC CCTGTGTGCA (10) 8.2 0.0082 P8 Cb GC GACTCAGGGC (3) 1.6 0.0016 Cb medulloblastoma CCTGTGTGCA (10) 18.5 0.0185 Cb medulloblastoma AGTGGTCAAG (2) 13.9 0.0139 Cb medulloblastoma TCCTCTTGCA (2) 2.3 0.0023 P8 GC+1d culture CCTGTGTGCA (10) 13.7 0.0137 P8 GC+1d culture AGTGGTCAAG (2) 2.3 0.0023 P8 GC+1d culture GACTCAGGGC (3) 2.3 0.0023 P8 GC+1d culture GCTGGATGTG (5) 1.1 0.0011 P8 GC+1d culture TCCTCTGCAC (4) 1.1 0.0011 P8 GC+SHH+1d culture CCTGTGTGCA (10) 10.5 0.0105 P8 GC+SHH+1d culture AGTGGTCAAG (2) 7 0.007 P8 GC+SHH+1d culture AGCGACAAAC (3) 1.2 0.0012 P8 GC+SHH+1d culture CTGCCCAGAC (2) 1.2 0.0012 P8 GC+SHH+1d culture GACTCAGGGC (3) 1.2 0.0012 3T3 fibroblasts CCTGTGTGCA (10) 7 0.007 3T3 fibroblasts GACTCAGGGC (3) 7 0.007 3T3 fibroblasts AGTGGTCAAG (2) 3.5 0.0035 3T3 fibroblasts GTTGAGTCCC (3) 3.5 0.0035 E15 cortex CCTGTGTGCA (10) 14.8 0.0148 E15 cortex AGTGGTCAAG (2) 4.9 0.0049 P1 cortex AGTGGTCAAG (2) 4.5 0.0045 P1 cortex CCTGTGTGCA (10) 4.5 0.0045 Hypothalamus AGTGGTCAAG (2) 19.9 0.0199 Hypothalamus CCTGTGTGCA (10) 5.4 0.0054 E12.5 retina CCTGTGTGCA (10) 20.7 0.0207 E12.5 retina AGTGGTCAAG (2) 13.1 0.0131 E12.5 retina GACTCAGGGC (3) 3.8 0.0038 E12.5 retina AGCGACAAAC (3) 1.9 0.0019 E12.5 retina GCTGGATGTG (5) 1.9 0.0019 E12.5 retina TCCTCTGCAC (4) 1.9 0.0019 E14.5 retina CCTGTGTGCA (10) 16.4 0.0164 E14.5 retina AGTGGTCAAG (2) 7.3 0.0073 E14.5 retina AGCGACAAAC (3) 1.8 0.0018 E14.5 retina CTGCCCAGAC (2) 1.8 0.0018 E16.5 retina AGTGGTCAAG (2) 10.9 0.0109 E16.5 retina CCTGTGTGCA (10) 9.1 0.0091 E16.5 retina TCCTCTTGCA (2) 3.6 0.0036 E16.5 retina CACACAGGCA (5) 1.8 0.0018 E16.5 retina CTGCCCAGAC (2) 1.8 0.0018 E18.5 retina AGTGGTCAAG (2) 14.6 0.0146 E18.5 retina CCTGTGTGCA (10) 7.3 0.0073 P0.5 retina CCTGTGTGCA (10) 5.9 0.0059 P0.5 retina GACTCAGGGC (3) 3.9 0.0039 P0.5 retina AGCGACAAAC (3) 2 0.002 P0.5 retina AGTGGTCAAG (2) 2 0.002 P0.5 retina CAAACAGGCA (3) 2 0.002 P0.5 retina CACACAGGCA (5) 2 0.002 P2.5 retina CCTGTGTGCA (10) 8.8 0.0088 P2.5 retina AGTGGTCAAG (2) 5.3 0.0053 P2.5 retina GTTGAGTCCC (3) 3.5 0.0035 P2.5 retina GGGGGGGCTT (3) 1.8 0.0018 P4.5 retina AGTGGTCAAG (2) 9.9 0.0099 P4.5 retina CCTGTGTGCA (10) 5.9 0.0059 P4.5 retina CACACAGGCA (5) 2 0.002 P4.5 retina GGGGGGGCTT (3) 2 0.002 P6.5 retina CCTGTGTGCA (10) 11.7 0.0117 P6.5 retina AGTGGTCAAG (2) 3.3 0.0033 P6.5 retina CACACAGGCA (5) 3.3 0.0033 P6.5 retina GGGGGGGCTT (3) 1.7 0.0017 P10.5 crx- retina AGTGGTCAAG (2) 3.7 0.0037 P10.5 crx- retina CACACAGGCA (5) 1.9 0.0019 P10.5 crx- retina CCTGTGTGCA (10) 1.9 0.0019 P10.5 crx- retina GCTGGATGTG (5) 1.9 0.0019 P10.5 crx- retina GTTGAGTCCC (3) 1.9 0.0019 P10.5 crx+ retina CCTGTGTGCA (10) 9.6 0.0096 P10.5 crx+ retina AGTGGTCAAG (2) 1.9 0.0019 P10.5 crx+ retina CAAACAGGCA (3) 1.9 0.0019 P10.5 crx+ retina CACACAGGCA (5) 1.9 0.0019 Adult retinal AGTGGTCAAG (2) 1.9 0.0019 Adult retinal CCTGTGTGCA (10) 1.9 0.0019 ONL AGTGGTCAAG (2) 1.9 0.0019 ONL CAAACAGGCA (3) 1.9 0.0019 ONL CACACAGGCA (5) 1.9 0.0019 ONL CCTGTGTGCA (10) 1.9 0.0019