Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.258204
Nsep1
nuclease sensitive element binding protein 1
4
4 D1
22608
Mm.258204
1700102N10Rik
RIKEN cDNA 1700102N10 gene
4
73541
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 124 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TGGTTGCTGG (
369
)
68.5
0.0685
P8 Cb GC
GGGTTTTTAT
(
5
)
42.4
0.0424
P8 Cb GC
CTGCATAGAT
(
2
)
4.9
0.0049
P8 Cb GC
CGGAGACCCT
(
3
)
3.3
0.0033
P8 Cb GC
GGGGTTTTTA (
3
)
3.3
0.0033
P8 Cb GC
TGGGTGCTAG (
16
)
3.3
0.0033
P8 Cb GC
TAATAAAGAA
(
4
)
1.6
0.0016
Cb medulloblastoma
TGGTTGCTGG (
369
)
113.3
0.1133
Cb medulloblastoma
GGGTTTTTAT
(
5
)
9.2
0.0092
Cb medulloblastoma
GCCCGGGGAT (
3
)
2.3
0.0023
Cb medulloblastoma
GTGACTGCTG
(
6
)
2.3
0.0023
Cb medulloblastoma
TAATAAAGAA
(
4
)
2.3
0.0023
P8 GC+1d culture
TGGTTGCTGG (
369
)
57.1
0.0571
P8 GC+1d culture
GGGTTTTTAT
(
5
)
34.2
0.0342
P8 GC+1d culture
CGGAGACCCT
(
3
)
3.4
0.0034
P8 GC+1d culture
GCCCGGGGAT (
3
)
3.4
0.0034
P8 GC+1d culture
ATCGGGTTTT (
4
)
1.1
0.0011
P8 GC+1d culture
CTGCATAGAT
(
2
)
1.1
0.0011
P8 GC+SHH+1d culture
TGGTTGCTGG (
369
)
89
0.089
P8 GC+SHH+1d culture
GGGTTTTTAT
(
5
)
42.2
0.0422
P8 GC+SHH+1d culture
CGGAGACCCT
(
3
)
2.3
0.0023
P8 GC+SHH+1d culture
CTGCATAGAT
(
2
)
2.3
0.0023
P8 GC+SHH+1d culture
GCCCGGGGAT (
3
)
1.2
0.0012
P8 GC+SHH+1d culture
GTTGCGGTGA
(
7
)
1.2
0.0012
P8 GC+SHH+1d culture
TAATAAAGAA
(
4
)
1.2
0.0012
3T3 fibroblasts
TGGTTGCTGG (
369
)
220.8
0.2208
3T3 fibroblasts
GTCATAGCTG (
590
)
10.5
0.0105
3T3 fibroblasts
CGGAGACCCT
(
3
)
3.5
0.0035
3T3 fibroblasts
CTGCATAGAT
(
2
)
3.5
0.0035
E15 cortex
TGGTTGCTGG (
369
)
277.1
0.2771
E15 cortex
CGGAGACCCT
(
3
)
29.7
0.0297
E15 cortex
GGGTTTTTAT
(
5
)
14.8
0.0148
E15 cortex
AGCAGCGAGG
(
9
)
4.9
0.0049
E15 cortex
GTCATAGCTG (
590
)
4.9
0.0049
E15 cortex
GTGACTGCTG
(
6
)
4.9
0.0049
E15 cortex
GTTGCGGTGA
(
7
)
4.9
0.0049
E15 cortex
TGGGTGCTAG (
16
)
4.9
0.0049
P1 cortex
TGGTTGCTGG (
369
)
86.4
0.0864
P1 cortex
GGGTTTTTAT
(
5
)
50
0.05
P1 cortex
GGGGTTTTAT
(
2
)
13.6
0.0136
P1 cortex
ATCGGGTTTT (
4
)
4.5
0.0045
P1 cortex
GTGACTGCTG
(
6
)
4.5
0.0045
P1 cortex
TAATAAAGAA
(
4
)
4.5
0.0045
Hypothalamus
TGGTTGCTGG (
369
)
349.6
0.3496
Hypothalamus
GGGTTTTTAT
(
5
)
12.7
0.0127
Hypothalamus
CGGAGACCCT
(
3
)
3.6
0.0036
Hypothalamus
CTGCATAGAT
(
2
)
3.6
0.0036
Hypothalamus
TAATAAAGAA
(
4
)
1.8
0.0018
Hypothalamus
TGGGTGCTAG (
16
)
1.8
0.0018
E12.5 retina
TGGTTGCTGG (
369
)
157.7
0.1577
E12.5 retina
GGGTTTTTAT
(
5
)
41.3
0.0413
E12.5 retina
CTGCATAGAT
(
2
)
3.8
0.0038
E12.5 retina
TAATAAAGAA
(
4
)
3.8
0.0038
E12.5 retina
ATCGGGTTTT (
4
)
1.9
0.0019
E14.5 retina
TGGTTGCTGG (
369
)
936.5
0.9365
E14.5 retina
GGGTTTTTAT
(
5
)
114.8
0.1148
E14.5 retina
CTGCATAGAT
(
2
)
23.7
0.0237
E14.5 retina
CGGAGACCCT
(
3
)
10.9
0.0109
E14.5 retina
AGCAGCGAGG
(
9
)
5.5
0.0055
E14.5 retina
TGGGTGCTAG (
16
)
3.6
0.0036
E14.5 retina
GGGGTTTTTA (
3
)
1.8
0.0018
E16.5 retina
TGGTTGCTGG (
369
)
767.9
0.7679
E16.5 retina
GGGTTTTTAT
(
5
)
86.9
0.0869
E16.5 retina
CTGCATAGAT
(
2
)
16.3
0.0163
E16.5 retina
CGGAGACCCT
(
3
)
5.4
0.0054
E16.5 retina
AGCAGCGAGG
(
9
)
3.6
0.0036
E18.5 retina
TGGTTGCTGG (
369
)
252.8
0.2528
E18.5 retina
GGGTTTTTAT
(
5
)
76.4
0.0764
E18.5 retina
CTGCATAGAT
(
2
)
9.1
0.0091
E18.5 retina
CGGAGACCCT
(
3
)
7.3
0.0073
E18.5 retina
TAATAAAGAA
(
4
)
1.8
0.0018
P0.5 retina
TGGTTGCTGG (
369
)
190.4
0.1904
P0.5 retina
GGGTTTTTAT
(
5
)
39.3
0.0393
P0.5 retina
CGGAGACCCT
(
3
)
7.9
0.0079
P0.5 retina
GGGGTTTTTA (
3
)
5.9
0.0059
P0.5 retina
GTCATAGCTG (
590
)
3.9
0.0039
P0.5 retina
ATCGGGTTTT (
4
)
2
0.002
P0.5 retina
GCCCGGGGAT (
3
)
2
0.002
P0.5 retina
GGGTTTCTAT
(
2
)
2
0.002
P2.5 retina
TGGTTGCTGG (
369
)
165.4
0.1654
P2.5 retina
GGGTTTTTAT
(
5
)
58.1
0.0581
P2.5 retina
TGGGTGCTAG (
16
)
7
0.007
P2.5 retina
AGCAGCGAGG
(
9
)
3.5
0.0035
P2.5 retina
GCCCGGGGAT (
3
)
3.5
0.0035
P2.5 retina
ATCGGGTTTT (
4
)
1.8
0.0018
P2.5 retina
CTGCATAGAT
(
2
)
1.8
0.0018
P2.5 retina
GTCATAGCTG (
590
)
1.8
0.0018
P2.5 retina
GTTGCGGTGA
(
7
)
1.8
0.0018
P4.5 retina
TGGTTGCTGG (
369
)
150.6
0.1506
P4.5 retina
GGGTTTTTAT
(
5
)
57.5
0.0575
P4.5 retina
CTGCATAGAT
(
2
)
5.9
0.0059
P4.5 retina
TAATAAAGAA
(
4
)
4
0.004
P4.5 retina
CGGAGACCCT
(
3
)
2
0.002
P4.5 retina
GTCATAGCTG (
590
)
2
0.002
P6.5 retina
TGGTTGCTGG (
369
)
156.7
0.1567
P6.5 retina
GGGTTTTTAT
(
5
)
35
0.035
P6.5 retina
ATCGGGTTTT (
4
)
3.3
0.0033
P6.5 retina
GTCATAGCTG (
590
)
3.3
0.0033
P6.5 retina
AGCAGCGAGG
(
9
)
1.7
0.0017
P6.5 retina
CTGCATAGAT
(
2
)
1.7
0.0017
P6.5 retina
GTTGCGGTGA
(
7
)
1.7
0.0017
P10.5 crx- retina
TGGTTGCTGG (
369
)
280.5
0.2805
P10.5 crx- retina
GGGTTTTTAT
(
5
)
26
0.026
P10.5 crx- retina
AGCAGCGAGG
(
9
)
5.6
0.0056
P10.5 crx- retina
CGGAGACCCT
(
3
)
3.7
0.0037
P10.5 crx- retina
TAATAAAGAA
(
4
)
1.9
0.0019
P10.5 crx- retina
TGGGTGCTAG (
16
)
1.9
0.0019
P10.5 crx+ retina
TGGTTGCTGG (
369
)
101.9
0.1019
P10.5 crx+ retina
GGGTTTTTAT
(
5
)
19.2
0.0192
P10.5 crx+ retina
TGGGTGCTAG (
16
)
5.8
0.0058
P10.5 crx+ retina
CTGCATAGAT
(
2
)
3.8
0.0038
P10.5 crx+ retina
TAATAAAGAA
(
4
)
1.9
0.0019
Adult retinal
TGGTTGCTGG (
369
)
214.8
0.2148
Adult retinal
GGGTTTTTAT
(
5
)
7.4
0.0074
Adult retinal
CGGAGACCCT
(
3
)
1.9
0.0019
Adult retinal
GGGGTTTTAT
(
2
)
1.9
0.0019
Adult retinal
GTCATAGCTG (
590
)
1.9
0.0019
Adult retinal
TGGGTGCTAG (
16
)
1.9
0.0019
ONL
TGGTTGCTGG (
369
)
398.4
0.3984
ONL
GGGTTTTTAT
(
5
)
15.3
0.0153
ONL
GTCATAGCTG (
590
)
5.7
0.0057
ONL
TGGGTGCTAG (
16
)
3.8
0.0038
ONL
ATCGGGTTTT (
4
)
1.9
0.0019
ONL
TAATAAAGAA
(
4
)
1.9
0.0019
